View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_low_13 (Length: 349)
Name: NF9870_low_13
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 33117043 - 33116706
Alignment:
| Q |
1 |
acttcctcaattggaacacctttggtttcaggtacgaaaacgaggacaaagaaaattgctatgacagcaacaattccaaacaacatgaatgtccatgcaa |
100 |
Q |
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| T |
33117043 |
acttcctcaattggaacacctttggtttctggtacgaaaacgaggacaaaggaacttgctatgacagcaacaattccaaacaacatgaatgtccatgcaa |
33116944 |
T |
|
| Q |
101 |
ctccaatagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctatacct |
200 |
Q |
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| T |
33116943 |
ctccaatagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctatacct |
33116844 |
T |
|
| Q |
201 |
taaagggtaaatctcagagtttatgacccacggaacagtccccattccaggtgaaaagaacagtatatagagagccaatccaatcagtgcaagccaaccc |
300 |
Q |
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| T |
33116843 |
taaagggtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaacagtatatagagagccaatccaatcagtgcaagccaaccc |
33116744 |
T |
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| Q |
301 |
aatttgctaggacatccttgtgtataccatgatctgtg |
338 |
Q |
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| T |
33116743 |
aatttgctaggacatccttgtgtataccatgatctgtg |
33116706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 33120136 - 33119996
Alignment:
| Q |
120 |
agataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagag |
219 |
Q |
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| T |
33120136 |
agataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagag |
33120037 |
T |
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| Q |
220 |
tttatgacccacggaacagtccccattccaggtgaaaagaa |
260 |
Q |
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| T |
33120036 |
ttgataacccatggaaccgttcccattcctggtgaaaagaa |
33119996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 21491884 - 21492014
Alignment:
| Q |
130 |
gattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgaccc |
229 |
Q |
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||||||||||||| |||||| || | ||| || ||||||| || ||||||||||| | |||||||||||| || || || || |||||||| | |||| |
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| T |
21491884 |
gattgagaaacaacaaggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaaccc |
21491983 |
T |
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| Q |
230 |
acggaacagtccccattccaggtgaaaagaa |
260 |
Q |
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| T |
21491984 |
atggaactgttcccattccaggcgagaagaa |
21492014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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