View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_low_14 (Length: 329)
Name: NF9870_low_14
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_14 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 37 - 319
Target Start/End: Complemental strand, 29469211 - 29468929
Alignment:
| Q |
37 |
tgttcatatggagagcagaaaagaggtatttacccacgagacacgggctttaaactcacggggtacattgttgtgattgttgtgtgccttgtgaaagctc |
136 |
Q |
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| T |
29469211 |
tgttcttatggagagcagaaaagacgtatttacccgcgagacacgggctttaaactcgcggtgtacattgttgtgattgttgcgagccttgtgaaagctc |
29469112 |
T |
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| Q |
137 |
atatgagaatgaatgacatgtctttttcggatgtgcaaaactagaggaggtgtgaagtgtagcaggtctatagaacattattcaagacaacttggatacg |
236 |
Q |
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| T |
29469111 |
atatgagaatgaatgacatgtctttttcggatgtgcaaaactagaggaggtgtgaagtgtagcaggtctatagaacattatacaagacaacttggatacg |
29469012 |
T |
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| Q |
237 |
acatatggttttgtagctctttactttcagttagtagaatctctacaacaccaacaactctttgatttcgtactgaccctttg |
319 |
Q |
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| T |
29469011 |
acatatggttttgtagcactttactttcagttagtagaatctctacaacaccaacaactctttgatttcgtactgaccctttg |
29468929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 126 - 319
Target Start/End: Complemental strand, 37924386 - 37924193
Alignment:
| Q |
126 |
tgtgaaagctcatatgagaatgaatgacatgtctttttcggatgtgcaaaactagaggaggtgtgaagtgtagcaggtctatagaacattattcaagaca |
225 |
Q |
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| T |
37924386 |
tgtgagagctcctatgagaatgactggtatgtcttctttggatgtgcaaaactagaggaggtgcggagtgcagcagatctatggcacattatacaagaca |
37924287 |
T |
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| Q |
226 |
acttggatacgacatatggttttgtagctctttactttcagttagtagaatctctacaacaccaacaactctttgatttcgtactgaccctttg |
319 |
Q |
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| T |
37924286 |
acttggaaacggcggatgattttgtagctcttttcttcaagttactagaatctctacatcaccaacaactctttgattttgtaatgaccctttg |
37924193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 295
Target Start/End: Original strand, 37871408 - 37871567
Alignment:
| Q |
135 |
tcatatgagaatgaatgacatgtctttttcggatgtgcaaaactagaggaggtgtgaagtgtagcaggtctatagaacattattcaagacaacttggata |
234 |
Q |
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| T |
37871408 |
tcatatgagaacggctgacatgtctttttcggatgtgcaaaattagagcaagtttggagtgcagcaggtctatggca-attaaacaagagaatttggaga |
37871506 |
T |
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| Q |
235 |
cgacatatggttttgtagctctttactttcagttagtagaatctctacaacaccaacaact |
295 |
Q |
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| T |
37871507 |
ttacatatggttctgtagctctattcattcaattattagaatgcctacatcacaaacaact |
37871567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 18055490 - 18055538
Alignment:
| Q |
126 |
tgtgaaagctcatatgagaatgaatgacatgtctttttcggatgtgcaa |
174 |
Q |
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| T |
18055490 |
tgtgatagctcatatgagaacaattgacatgtctttttcgcatgtgcaa |
18055538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 319
Target Start/End: Complemental strand, 40731211 - 40730960
Alignment:
| Q |
67 |
tacccacgagacacgggctttaaactcacggggtacattgttgtgattgttgtgtgccttgtgaaagctcatatgagaatgaatgacatgtctttttcgg |
166 |
Q |
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| T |
40731211 |
tacccatgagacacgtgctttaaacatgtggtgtacattgttgtgatcgttgcgtgcactctgatagttcatatgaaaatgacttacatgtattttttga |
40731112 |
T |
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| Q |
167 |
atgtgcaaaactagaggaggtgtgaagtgtagcaggtctatagaacattattcaagacaacttggatacgacatatggttttgtagctctttactttcag |
266 |
Q |
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| T |
40731111 |
acatgcaaaactagatgaggtgtggagtgcagcaggtatatgacacattatacaaaacaatatggatatgaatgatggttttgtag-ttttttgtttttg |
40731013 |
T |
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| Q |
267 |
ttagtagaatctctacaacaccaacaactctttgatttcgtactgaccctttg |
319 |
Q |
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| T |
40731012 |
ttactagaatctctataacaccaacaacttcttgatttcataatgaccctttg |
40730960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 319
Target Start/End: Original strand, 4430227 - 4430304
Alignment:
| Q |
241 |
atggttttgtagctctttactttcagttagtagaatctctacaacaccaacaactctttgatttcgtactgaccctttg |
319 |
Q |
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| T |
4430227 |
atggttttctagctcttttcttcc-gttactataatctttacaacaccaacaactctttgatttcgtaatgatcctttg |
4430304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 256
Target Start/End: Complemental strand, 19234 - 19060
Alignment:
| Q |
83 |
gctttaaactcacggggtacattgttgtgattgttgtgtgccttgtgaaagctcatatgagaatgaatgacatgt-ctttttcggatgtgcaaaactaga |
181 |
Q |
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| T |
19234 |
gcttcaaactcacagtgtccattgtagtgatcgatgtgtgcactgtgagagctcatatgagaacgactgacatgtgttttttctgatgtgcgaaatttga |
19135 |
T |
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| Q |
182 |
ggaggtgtgaagtgtagcaggtctatagaacattattcaagacaacttggatacgacatatggttttgtagctct |
256 |
Q |
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| T |
19134 |
acaagtttggagtgcagcaggtctatggcatattatacaagagaatttggaaactacggatgattttgtagctct |
19060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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