View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9870_low_15 (Length: 280)
Name: NF9870_low_15
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 36065086 - 36064833
Alignment:
| Q |
18 |
aattttacaatcaaaaatagaaaaattcaccagagttatgaacattctgtgtatatttcaaggaccaccaccaccaaggaaaatgaatctaatacaaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36065086 |
aattttacaatcaaaaatagaaaaattcaccagagttatgaacattctgtgtatatttcaaggaccaccaccaccaaggaaaatgaatctaatacaaaga |
36064987 |
T |
|
| Q |
118 |
tttgaaatgaaagaaaacataacaataataacatcaaggaacaaatttaatcataaaaggtgaaacattaatcatca-ttttattgtagaagcataaaga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36064986 |
tttgaaatgaaagaaaacataacaataataacatcaaggaacaaatttaatcataaaaggtgaaacattaatcatcatttttattgtagaagcataaaga |
36064887 |
T |
|
| Q |
217 |
gtatgcaatttctatctgtacatactcaaatttatcagactagaagggcctatg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36064886 |
gtatgcaatttctatctgtacatactcaaatttatcagactagaagggcctatg |
36064833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University