View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_low_17 (Length: 264)
Name: NF9870_low_17
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 31457906 - 31457652
Alignment:
| Q |
10 |
gaagcaaagggtccaccggtggcagtggtggtggggattcaatgaaagcaccgggaggtggtggatcatacatatctcgtggtgcatttgaaaacaaccc |
109 |
Q |
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| T |
31457906 |
gaagcaaagggtccaccggtggcagtggtggtggggattcaatgaaagcacctggaggtggtggatcatacatatctcgtggtgcatttgaaaacaaccc |
31457807 |
T |
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| Q |
110 |
tcaaggctattttagtggtcttcattctgttgacaaggccaacaagtagtgctataattcatccagctattacttgtttttaactagcctcttaattttc |
209 |
Q |
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| T |
31457806 |
tcaaggctattttagtggtcttcattctgctgacaaggccaacaagtagtgctataattcatccagctattacttgtttttaactagcctcttaattttc |
31457707 |
T |
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| Q |
210 |
tcattaataaataattatgtaactgtgtggtggtgaatgtgatttatatatgtca |
264 |
Q |
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| T |
31457706 |
tcattaataaattaatatgtaactgtgtggtggtgaatgtgatttatatatgtca |
31457652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 49085855 - 49085607
Alignment:
| Q |
10 |
gaagcaaagggtccaccggtggcagtggtggtggggattcaatgaaagcaccgggaggtggtggatcatacatatctcgtggtgcatttgaaaacaaccc |
109 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49085855 |
gaagcaaagggtccaccggtggcagtggtggtggagattcaatgaaagcaccgggaggtggtggatcatacatatctcgtggtgcatttgaaagcaaccc |
49085756 |
T |
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| Q |
110 |
tcaaggctattttagtggtcttcattctgttgacaaggccaacaagtagtgctataattcatccagctattacttgtttttaactagcctcttaattttc |
209 |
Q |
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| T |
49085755 |
acaaggctattttggtggtcttcatgctgctgacaaggccaacaagtagtgctat--ttcatccagctattacttgtttttaactggcctcttaattttc |
49085658 |
T |
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| Q |
210 |
tcattaataaataattatgtaactgtgtggtggtgaatgtgatttatatat |
260 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
49085657 |
tcattaataaataaatatgtaactgtgtggtggctaatgtgatttatatat |
49085607 |
T |
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