View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9870_low_21 (Length: 242)

Name: NF9870_low_21
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9870_low_21
NF9870_low_21
[»] chr1 (2 HSPs)
chr1 (87-223)||(49084851-49084974)
chr1 (1-45)||(49085414-49085458)
[»] chr8 (2 HSPs)
chr8 (90-174)||(31457308-31457392)
chr8 (190-224)||(31457116-31457150)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 49084974 - 49084851
Alignment:
Q  87 gagggttattttgctaggaatttaagtttatagtgcatattgttttcgaataattttgtgctgatagctaggatgtaaagtatctatatatattaccatt 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||| ||||||||||||||||||||  |||||||    
T  49084974 gagggttattttgctaggaatttaagtttatagtgcatattgtttt-----------gtgctgatagctacgatgtaaagtatctatatat--taccatt 49084888  T
Q  187 atccctaaagccatgagatcttattttgaggtgatgg 223  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  49084887 atccgtaaagccatgagatcttattttggggtgatgg 49084851  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49085458 - 49085414
Alignment:
Q  1 ttaagaaacggtgagatcccttctcaaattaaacaacctagaaac 45  Q
    |||||||| ||| |||||||||||||||| |||||||||||||||    
T  49085458 ttaagaaatggtaagatcccttctcaaataaaacaacctagaaac 49085414  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 31457392 - 31457308
Alignment:
Q  90 ggttattttgctaggaatttaagtttatagtgcatattgttttcgaataattttgtgctgatagctaggatgtaaagtatctata 174  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31457392 ggttattttgttaggaatttaagtttatagttcatattgttttcgaataattttgtgctgatagctaggatgtaaaatatctata 31457308  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 31457150 - 31457116
Alignment:
Q  190 cctaaagccatgagatcttattttgaggtgatggg 224  Q
    |||||||||||||||||||||||||||||||||||    
T  31457150 cctaaagccatgagatcttattttgaggtgatggg 31457116  T

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