View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_low_22 (Length: 237)
Name: NF9870_low_22
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 4124659 - 4124455
Alignment:
| Q |
14 |
caaaggacaaaacagttgaaaactatgaatagttcgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatacaagtaca |
113 |
Q |
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| T |
4124659 |
caaaggacaaaacagttgaaaactatgaataatttgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatataagtaca |
4124560 |
T |
|
| Q |
114 |
aacaaaattcacacatcagtccataaatcaacacagtaaataaaagaaaccagaggaatttcaaacctatctattatgctgaattttaaaattcacagca |
213 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4124559 |
aacaaaattcacataacagtccataaatcaacacagtaaataaaagaaaccagaggaatttcaaacctatctattatgctgaattttaaaattcacagca |
4124460 |
T |
|
| Q |
214 |
gaatg |
218 |
Q |
| |
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||||| |
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| T |
4124459 |
gaatg |
4124455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 4360050 - 4360150
Alignment:
| Q |
44 |
agttcgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatacaagtacaaacaaaattcacacatcagtccataaatca |
143 |
Q |
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|||| ||||||| |||| ||||||||||||| ||||||| |||||||| |||||||||||| |||| ||||||||| |||| | ||| ||||||||| |
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| T |
4360050 |
agtttgattatattacataagatccatcataaccctaacaatgaatttgtttacaatgtataatagtataaacaaaatccacatagtagtacataaatca |
4360149 |
T |
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| Q |
144 |
a |
144 |
Q |
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| T |
4360150 |
a |
4360150 |
T |
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