View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9870_low_23 (Length: 233)

Name: NF9870_low_23
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9870_low_23
NF9870_low_23
[»] chr5 (13 HSPs)
chr5 (19-221)||(41366226-41366428)
chr5 (76-221)||(41328033-41328178)
chr5 (33-221)||(41332046-41332234)
chr5 (64-221)||(41316066-41316223)
chr5 (155-221)||(31188759-31188825)
chr5 (157-221)||(31224988-31225052)
chr5 (66-221)||(41324135-41324290)
chr5 (54-221)||(31178613-31178780)
chr5 (76-221)||(41322116-41322262)
chr5 (156-221)||(41336975-41337040)
chr5 (57-182)||(41286141-41286266)
chr5 (152-221)||(41430997-41431066)
chr5 (193-221)||(31185277-31185305)
[»] chr4 (1 HSPs)
chr4 (54-221)||(17249346-17249513)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 41366428 - 41366226
Alignment:
Q  19 aaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41366428 aaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgcccgcg 41366329  T
Q  119 ctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366328 ctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaaccgatccttcacttgcagttattgatttaacaagatttgacacctcttcttc 41366229  T
Q  219 tct 221  Q
    |||    
T  41366228 tct 41366226  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 41328178 - 41328033
Alignment:
Q  76 aacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatcctt 175  Q
    ||||| ||||||||| ||||| |||| ||||| |||| ||||||||| |||||| |||| | ||||| |||| |  ||||||||||||||||||||||||    
T  41328178 aacacatcttggtgtctattccttttcccaaaagctgcccgcgctgttatcccatttgtcattgagaaaatcttccgagtgagattaacaactgatcctt 41328079  T
Q  176 cacttgcagttattgatttaacaagatttgacacctcttcttctct 221  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||    
T  41328078 cacttgcagttattgatttaacaaggtttgacacctcatcttctct 41328033  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 41332234 - 41332046
Alignment:
Q  33 aaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaatt 132  Q
    ||||||||| ||||||   |||| || || |||||||||| | ||||| ||||||| | ||||| |||| ||||| |||| ||||||||| |||||| ||    
T  41332234 aaatcctcctaatagcaccaatactttctccattgctgatatgaacacatcttggtttctattccttttcccaaaagctgcccgcgctgttatcccattt 41332135  T
Q  133 gttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctct 221  Q
    || | ||||| |||| |  |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  41332134 gtcattgagaaaatcttccgagtgagatttacaaccgatccttcacttgcagttattgatttaacaagatttgtcacttcatcttctct 41332046  T

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Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 41316223 - 41316066
Alignment:
Q  64 attgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaa 163  Q
    ||||||||| |||||||||||||||||||  || |||| ||||| || |  |||||||| ||||||  |||   ||| | |||| | |||||||||||||    
T  41316223 attgctgatctaaacacttcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttgacaaaatcttctgagtgagattaa 41316124  T
Q  164 caactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctct 221  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  41316123 caactgatccttcacttgcagttattgatttaacaagatttgtcacttcatcttctct 41316066  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 31188759 - 31188825
Alignment:
Q  155 tgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctct 221  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31188759 tgagattaacaattgatccttcacttgcagatattgatttaacaagatttgacacctcttcttctct 31188825  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 31225052 - 31224988
Alignment:
Q  157 agattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctct 221  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  31225052 agattaacaattgatccttcacttgcagatattgattcaacaagatttgacacctcttcttctct 31224988  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 41324290 - 41324135
Alignment:
Q  66 tgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaaca 165  Q
    |||||||||||||  ||  ||||||||  || |||| ||||| || | ||||| ||| ||||||  ||| | ||||| |||| | |||||||||||||||    
T  41324290 tgctgatttaaacgattgctggtgtttgctccttttgccaaaagccgcccgcgttgttatcccatatgtcattgagaaaatcttatgagtgagattaaca 41324191  T
Q  166 actgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctct 221  Q
    | ||||||||||||||||||||||||| || |||||||||| || || ||||||||    
T  41324190 attgatccttcacttgcagttattgatgtagcaagatttgatacttcatcttctct 41324135  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 31178613 - 31178780
Alignment:
Q  54 tatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttga 153  Q
    ||||||||| ||||||||||  ||||||| ||||||||||||| |||| ||||| ||||  || |  || ||| |   ||| | || || |||| | |||    
T  31178613 tatttcctttattgctgattggaacacttgttggtgtttattccttttcccaaacgctgctcgtgtcgttatcgccgatgtcattgcgaaaatcttatga 31178712  T
Q  154 gtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctct 221  Q
     ||||||| ||||||||||||| ||||| || ||| ||||||| ||||||||||||||||| ||||||    
T  31178713 ctgagatttacaactgatcctttacttgtagatatcgatttaataagatttgacacctcttattctct 31178780  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 41322262 - 41322116
Alignment:
Q  76 aacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatcctt 175  Q
    ||||| ||||||||| ||||| |||| |||||  | | || |||||| ||||||  ||| | ||||| |||| | | | |||||||||||||||||||||    
T  41322262 aacacatcttggtgtctattccttttcccaaaaaccgccctcgctgttatcccatatgtcattgagaaaatcttctcactgagattaacaactgatcctt 41322163  T
Q  176 cacttgca-gttattgatttaacaagatttgacacctcttcttctct 221  Q
    |||||  | |||||||||||||||||||||| ||| || ||||||||    
T  41322162 cacttaaaagttattgatttaacaagatttgtcacttcatcttctct 41322116  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 41337040 - 41336975
Alignment:
Q  156 gagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctct 221  Q
    ||||||||| | |||||||||| |||||| |||||||||||||||||  |||||||||||||||||    
T  41337040 gagattaacgattgatccttcatttgcagatattgatttaacaagatcggacacctcttcttctct 41336975  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 41286266 - 41286141
Alignment:
Q  57 ttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtg 156  Q
    ||||| ||||||| |||| ||  ||||||||||| | |||||||| ||||| | ||  ||||| || ||||||   |||  ||| | |||| | ||||||    
T  41286266 ttcctccattgctaatttgaatgcttcttggtgtatgttctttttcccaaaagttgcacgcgccgttatcccataggttgttgacaaaatcttctgagtg 41286167  T
Q  157 agattaacaactgatccttcacttgc 182  Q
    ||||||||||||||||||||||||||    
T  41286166 agattaacaactgatccttcacttgc 41286141  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 41431066 - 41430997
Alignment:
Q  152 gagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctct 221  Q
    ||||||||||||||| ||||||||||| || |  ||| |||||||| || ||||| ||||||||||||||    
T  41431066 gagtgagattaacaattgatccttcacatgtacatatggatttaactagttttgaaacctcttcttctct 41430997  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 31185277 - 31185305
Alignment:
Q  193 ttaacaagatttgacacctcttcttctct 221  Q
    |||||||||||||||||||||||||||||    
T  31185277 ttaacaagatttgacacctcttcttctct 31185305  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 17249346 - 17249513
Alignment:
Q  54 tatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttga 153  Q
    ||||||||  ||||||||||| ||||||| ||||||||| ||| |||| || || ||||  |||||    ||||||  |||||| ||   |||| | |||    
T  17249346 tatttcctctattgctgatttgaacacttgttggtgtttgttccttttcccgaaagctgctcgcgccactatcccatatgttaaagaagaaatcttctga 17249445  T
Q  154 gtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctct 221  Q
    ||||||||||||||  |||||||||||| |  ||||||||||||||||| | |||| |||||||||||    
T  17249446 gtgagattaacaacacatccttcacttgaaaatattgatttaacaagatctaacacttcttcttctct 17249513  T

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