View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9870_low_24 (Length: 229)
Name: NF9870_low_24
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_24 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 42762628 - 42762402
Alignment:
| Q |
5 |
caacaacatcattgttgtggcttctggaggtaattcaggacctgttcctagcactgtatccaacttggaaccttggacgctcacagttgctgcaagcaca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42762628 |
caacaacatcattgttgtggcttctggaggtaattcaggacctgttcctagtactgtatccaacttggaaccttggacgctcacagttgctgcaagcaca |
42762529 |
T |
|
| Q |
105 |
attgatagagatttcacaagttatgttattcttggtaacnnnnnnntactcaaggtatattgtttattacttacacctaatattttatttgaaaacgatc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42762528 |
attgatagagatttcacaagttatgttattcttggtaacaaaaaaatactcaaggtatattgtttattacttacaccttatattttatttgaaaacgatc |
42762429 |
T |
|
| Q |
205 |
atc--atatatgatagaaaaagttaaa |
229 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
42762428 |
atcatatatatgatagaaaaagttaaa |
42762402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 42743647 - 42743481
Alignment:
| Q |
5 |
caacaacatcattgttgtggcttctggaggtaattcaggacctgttcctagcactgtatccaacttggaaccttggacgctcacagttgctgcaagcaca |
104 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743647 |
caacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagcaaacctggaaccttggacgctcacagttgctgcaagcaca |
42743548 |
T |
|
| Q |
105 |
attgatagagatttcacaagttatgttattcttggtaacnnnnnnntactcaaggtatattgtttat |
171 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
42743547 |
atagatagagatttcacaagttatgttattcttggtaacaagaaaatattcaaggtatattgtttat |
42743481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 42753006 - 42752840
Alignment:
| Q |
5 |
caacaacatcattgttgtggcttctggaggtaattcaggacctgttcctagcactgtatccaacttggaaccttggacgctcacagttgctgcaagcaca |
104 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42753006 |
caacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagcaaacctggaaccttggacgctcacagttgctgcaagcaca |
42752907 |
T |
|
| Q |
105 |
attgatagagatttcacaagttatgttattcttggtaacnnnnnnntactcaaggtatattgtttat |
171 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
42752906 |
atagatagagatttcacaagttatgttattcttggtaacaagaaaatattcaaggtatattgtttat |
42752840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 42734863 - 42735001
Alignment:
| Q |
5 |
caacaacatcattgttgtggcttctggaggtaattcaggacctgttcctagcactgtatccaacttggaaccttggacgctcacagttgctgcaagcaca |
104 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||| | ||| ||||||| |||| ||||||||||||||||||||| |
|
|
| T |
42734863 |
caacaacataattgttgtggcttctggaggtaattcaggaccttcttctaacactgtagcaaacatggaaccgtggatcctcacagttgctgcaagcaca |
42734962 |
T |
|
| Q |
105 |
attgatagagatttcacaagttatgttattcttggtaac |
143 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||| |
|
|
| T |
42734963 |
attgatagagacttcacaagttatgttgtacttggtaac |
42735001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 42717018 - 42716895
Alignment:
| Q |
9 |
aacatcattgttgtggcttctggaggtaattcaggacctgttcctagcactgtatccaacttggaaccttggacgctcacagttgctgcaagcacaattg |
108 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||||| ||| | | |||||||||||||| ||||||| |
|
|
| T |
42717018 |
aacataattgttgtggctgctggaggaaattcaggacctgctcctagtactgtatccaacttggaaccatgggtgtttacagttgctgcaagtacaattg |
42716919 |
T |
|
| Q |
109 |
atagagatttcacaagttatgtta |
132 |
Q |
| |
|
||||||| ||||| |||| ||||| |
|
|
| T |
42716918 |
atagagagttcactagttttgtta |
42716895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 42769453 - 42769345
Alignment:
| Q |
57 |
actgtatccaacttggaaccttggacgctcacagttgctgcaagcacaattgatagagatttcacaagttatgttattcttggtaacnnnnnnntactca |
156 |
Q |
| |
|
|||| ||||||||||||||| ||| || |||||||||||||||| |||| |||||||| ||||| |||||||||| |||||||||| |||||| |
|
|
| T |
42769453 |
actgcatccaacttggaaccgtggtcgatcacagttgctgcaagtacaacggatagagaattcactagttatgttactcttggtaacaagaaaatactca |
42769354 |
T |
|
| Q |
157 |
aggtatatt |
165 |
Q |
| |
|
||||||||| |
|
|
| T |
42769353 |
aggtatatt |
42769345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 23040827 - 23040993
Alignment:
| Q |
5 |
caacaacatcattgttgtggcttctggaggtaattcaggacctgttcctagcactgtatccaacttggaaccttggacgctcacagttgctgcaagcaca |
104 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||||| |||||| |||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
23040827 |
caacaacatcattgttgtgtctggtggaggaaattcaggacctgatcctagtactgtatccaacttggaaccttggacacttacagttgctgcaagcaca |
23040926 |
T |
|
| Q |
105 |
attgatagagatttcacaagttatgttattcttggtaacnnnnnnntactcaaggtatattgtttat |
171 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23040927 |
attgatcgagatttcacaagctatgttattcttggtaacaagaaaatactcaaggtatattgtttat |
23040993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 37108231 - 37108173
Alignment:
| Q |
85 |
tcacagttgctgcaagcacaattgatagagatttcacaagttatgttattcttggtaac |
143 |
Q |
| |
|
||||||||| ||| |||||||| |||||||| ||| | ||||||||| ||||||||||| |
|
|
| T |
37108231 |
tcacagttggtgccagcacaatggatagagagttccctagttatgttgttcttggtaac |
37108173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University