View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9870_low_25 (Length: 226)
Name: NF9870_low_25
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 39520987 - 39521182
Alignment:
| Q |
18 |
ggattgaaccacaaaatcataataataaggcatctgtagtgacaaacttgtgtctttattgacattcacaacataagtgtcataaattaagagaaggaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39520987 |
ggattgaaccacaaaatcataataataaggcatctgtagtgacaaacttgtgtcattattgacattcacaacataagtgtcataaattaagagaaggaaa |
39521086 |
T |
|
| Q |
118 |
tctgtcagaccagactgtcgattactaaaaacgtcacagaaatgaaacctaagtaaatgatctacgttcttctctacaggaacactccaacctatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39521087 |
tctgtcagaccagactgtcgattactaaaaacgtcacagaaatgaaacctaagtaaatgatctacgttcttctctacaggaacactccaacttatg |
39521182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 39575629 - 39575826
Alignment:
| Q |
18 |
ggattgaaccacaaaatcataataataaggcatctgtagtgacaaacttgtgtctttattgacattcacaacataagtgtcataaattaagagaaggaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39575629 |
ggattgaaccacaaaatcataataataaggcatttgtagtgacaaacttgtgtcattattgacattcacaacataattgtcataaattaagagaaggaaa |
39575728 |
T |
|
| Q |
118 |
tctgtcagaccagactgtcgattactaaaaacgtcacagaaatgaaacctaagtaaatgatctacgttcttctctacaggaacactccaacctatgct |
215 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39575729 |
tctgtaagaccagattgtcgattactgaaaacgtcacaaaaatgaaacctaagaaaatgatctacgttcttctctacaggaacactccaacttatgct |
39575826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 39524486 - 39524676
Alignment:
| Q |
23 |
gaaccacaaaatcataataataaggcatctgtagtgacaaacttgtgtctttattgacattcacaacataagtgtcataaattaagagaaggaaatctgt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||| | ||||||| ||||||||| ||||||| |||| ||| |
|
|
| T |
39524486 |
gaaccacaaaatcataataataaggcatctgtagtgacaaactttggttatcatttacatttataacataactgtcataaacgaagagaatgaaagttgt |
39524585 |
T |
|
| Q |
123 |
cagaccagactgtcgattactaaaaacgtcacagaaatgaaacctaagtaaatgatctacgttcttctctacaggaacactccaacctatg |
213 |
Q |
| |
|
||||||| |||| ||| |||||||| |||||| ||||||| | |||| |||||||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
39524586 |
aagaccagtctgttgatcactaaaaatgtcacaaaaatgaagcataaggaaatgatctatattcttctccacaggaacactccaacttatg |
39524676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 39510738 - 39510933
Alignment:
| Q |
18 |
ggattgaaccacaaaatcataataataaggcatctgtagtgacaaacttgtgtctttattgacattcacaacataagtgtcataaattaagagaaggaaa |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||| || ||||| ||||||| || ||||||||| |||||||||| |||||| |||| |
|
|
| T |
39510738 |
ggattgaaccacgaaatcataataataaggcatctgtattgacaggctagtgtcattattgatatatacaacataactgtcataaatgaagagattgaaa |
39510837 |
T |
|
| Q |
118 |
tctgtcagaccagactgtcgattactaaaaacgtcacagaaatgaaacctaagtaaatgatctacgttcttctctacaggaacactccaacctatg |
213 |
Q |
| |
|
||| ||| |||||||||||| |||||||| |||||||||||||| ||| || ||||||||||| | || | |||||||||||||||| |||| |
|
|
| T |
39510838 |
gttgtaagagcagactgtcgatcactaaaaatgtcacagaaatgaagcctgaggaaatgatctacagttttttgcacaggaacactccaacttatg |
39510933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 39580176 - 39580364
Alignment:
| Q |
23 |
gaaccacaaaatcataataataaggcatctgtagtgacaaacttgtgtctttattgacattcacaacataagtgtcataaattaagagaaggaaatctgt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| || | ||| ||||| | ||||||| |||| |||| |||||| |||| ||| |
|
|
| T |
39580176 |
gaaccacaaaatcataataataaggcatctgtattgacaaactttggttatcatttacatttataacataactgtc--aaatgaagagagtgaaaaatgt |
39580273 |
T |
|
| Q |
123 |
cagaccagactgtcgattactaaaaacgtcacagaaatgaaacctaagtaaatgatctacgttcttctctacaggaacactccaacctatg |
213 |
Q |
| |
|
| |||||| ||||||| | |||||| |||||| ||||||| ||| || ||||||| | ||||| || |||||||||||||||| |||| |
|
|
| T |
39580274 |
aaaaccagattgtcgatcattaaaaatgtcacataaatgaagcctgaggtaatgatcaatattcttttccacaggaacactccaacttatg |
39580364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 39543902 - 39543972
Alignment:
| Q |
143 |
taaaaacgtcacagaaatgaaacctaagtaaatgatctacgttcttctctacaggaacactccaacctatg |
213 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||| | |||| || |||||||||||||||| |||| |
|
|
| T |
39543902 |
taaaaatgtcacagaaatgaagcctaaggaaatgatcaatactcttttcaacaggaacactccaacttatg |
39543972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University