View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_low_4 (Length: 509)
Name: NF9870_low_4
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_4 |
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| [»] scaffold0373 (2 HSPs) |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 126 - 490
Target Start/End: Original strand, 5596291 - 5596655
Alignment:
| Q |
126 |
aattaaattcaaatgagagaggcttaaatccaacttgcaacataacatgaaaagaagatagcttttattgaagggaaaatgtgtatcctattattcactc |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5596291 |
aattaaattcaaatgagagaggcttaaatccaacttgcaacataacaagaaaagaagatagcttttattgaagggaaaatgtgtatcctattattcactc |
5596390 |
T |
|
| Q |
226 |
acatttttatctccaacagcattcttatctacatcaccagaaacaataacatacttgtccactgcatcccagttcttcttattatcatgtacattttcgc |
325 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5596391 |
acatttttatctccaacagcattcttatctacatcaccagaaacaataacatacttgtccactgcatcccagttcttcttattatcatgtacattttcgc |
5596490 |
T |
|
| Q |
326 |
aaccagaaacaacataattcttatttgattccatgacatcatcaccagaaacaatagtattctcattcactgcatgccagtgcttatcatcacttatatt |
425 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5596491 |
aaccagaaacaacataattcttatttgattccatgacatcatcaccagaaacaatagtattctcattcactgcataccagtgcttatcatcacttatatt |
5596590 |
T |
|
| Q |
426 |
ttcattttgaccaggaccggtaacattgtcatccgctggcacatcaatattgtcaccaccataag |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5596591 |
ttcattttgaccaggaccggtaacattgtcatccgctggcacatcaacattgtcaccaccataag |
5596655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 183 - 490
Target Start/End: Complemental strand, 6762322 - 6762012
Alignment:
| Q |
183 |
atagcttttattgaagggaaaatgtgtatcctattattcactcacatttttatctccaacagcattcttatctacatcaccagaaacaataacatacttg |
282 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
6762322 |
atagcttttatttaaaggaaaatgcgtatcctattattcactcacatttttatttccaacagcattcttatctacatcaccagaaacaataacatccttg |
6762223 |
T |
|
| Q |
283 |
tccactgcatcccagttcttcttattatcatgtacattttcgcaaccagaaacaacataattcttatttgattccatgacatcatcaccagaaacaatag |
382 |
Q |
| |
|
| |||||||||||||||||||| |||||| |||||||| ||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
6762222 |
ttaactgcatcccagttcttctttttatcaggtacatttccgcaaccagaaacggcataattcttgtttgattccacagcatcatcaccagaaacaatag |
6762123 |
T |
|
| Q |
383 |
tattctcattcactgcatgccagtgc---ttatcatcacttatattttcattttgaccaggaccggtaacattgtcatccgctggcacatcaatattgtc |
479 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||||||||||||| || | |||||| ||||||||| |||||||||| ||||||||||| || |
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| T |
6762122 |
cattctcattcactgcatggcagtgcttattatcttcacttatattttcatcttcattaggaccagtaacattgacatccgctggtacatcaatattatc |
6762023 |
T |
|
| Q |
480 |
accaccataag |
490 |
Q |
| |
|
||||||||||| |
|
|
| T |
6762022 |
accaccataag |
6762012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 270 - 490
Target Start/End: Complemental strand, 6740979 - 6740760
Alignment:
| Q |
270 |
aataacatacttgtccactgcatcccagttcttcttattatcatgtacattttcgcaaccagaaacaacataattcttatttgattccatgacatcatca |
369 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||| |
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|
| T |
6740979 |
aataacatctttgtccactgcatcccagttcttcttattatcatgtacatttttgcaaccagaaacaacttaattcttatttgattccatggaagcatca |
6740880 |
T |
|
| Q |
370 |
ccagaaacaatagtattctcattcactgcatgccagtgcttatcatcacttatattttcattttgaccaggaccggtaacattgtcatccgctggcacat |
469 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| || |||||| |||||||||||||||| |||||||| ||| ||| |||||| |||||||||||||| |
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|
| T |
6740879 |
ccagaaacaatagcactctcattcactgcatgcc-gttcttatcttcacttatattttcatcttgaccagcaccagtagcattgttatccgctggcacat |
6740781 |
T |
|
| Q |
470 |
caatattgtcaccaccataag |
490 |
Q |
| |
|
|||||||||||| |||||||| |
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|
| T |
6740780 |
caatattgtcacgaccataag |
6740760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 5589955 - 5590052
Alignment:
| Q |
13 |
agcacagacaagggaaggaaagttggtgaggagtccacggaaaatctaataaacccataaacaaagagagaaactcaggatccaaaaaatgagtgtgt |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5589955 |
agcacagaaaagggaaggaaagttggtgaggagtccacggaaaatctaataaacccataaacaaagagagaaactcaggatccaaaaaatgagtgtgt |
5590052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 363 - 484
Target Start/End: Complemental strand, 6652716 - 6652595
Alignment:
| Q |
363 |
atcatcaccagaaacaatagtattctcattcactgcatgccagtgcttatcatcacttatattttcattttgaccaggaccggtaacattgtcatccgct |
462 |
Q |
| |
|
||||||||||| ||||| || ||||| || ||||||||||||||||||||| ||||||||||||| || |||| |||||| || |||||| ||| || |
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|
| T |
6652716 |
atcatcaccaggaacaacagcattcttatccactgcatgccagtgcttatcttcacttatatttttatcttgaattggaccgatagcattgtaatcttct |
6652617 |
T |
|
| Q |
463 |
ggcacatcaatattgtcaccac |
484 |
Q |
| |
|
|||||||||||||| ||||||| |
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|
| T |
6652616 |
ggcacatcaatattatcaccac |
6652595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 6759635 - 6759542
Alignment:
| Q |
342 |
attcttatttgattccatgacatcatcaccagaaacaatagtattctcattcactgcatgccagtgcttatcatcacttatattttcattttga |
435 |
Q |
| |
|
||||||||||||||| || |||| |||||||||||||||| | ||| || |||||||||||| |||||||| |||||||| |||||| |||| |
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|
| T |
6759635 |
attcttatttgattctttggcatcgtcaccagaaacaatagaactcttatccactgcatgccaatgcttatcttcacttatgatttcatcttga |
6759542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 6762739 - 6762634
Alignment:
| Q |
13 |
agcacagacaagggaaggaaagttggtgaggagtccacggaaaatctaataaaccca---taaacaaag-----agagaaactcaggatccaaaaaatga |
104 |
Q |
| |
|
|||||| ||||||||||||| |||||| ||||||||| || ||||||||||| || ||||||||| |||||||||||||||||||||||||| |
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|
| T |
6762739 |
agcacaaacaagggaaggaagtatggtgaagagtccacgaaatatctaataaacacatactaaacaaagagagaagagaaactcaggatccaaaaaatga |
6762640 |
T |
|
| Q |
105 |
gtgtgt |
110 |
Q |
| |
|
|||||| |
|
|
| T |
6762639 |
gtgtgt |
6762634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 6741230 - 6741138
Alignment:
| Q |
14 |
gcacagacaagggaaggaaagttggtgagga---gtccacggaaaatctaataaacccataaacaaagagagaaactcaggatccaaaaaatg |
103 |
Q |
| |
|
||||||||||||||||||| |||| || || |||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
6741230 |
gcacagacaagggaaggaagtttggggaagaagagtccacaaaatatctaataaacacataagtaaagagagaaactcaggatccaaaaaatg |
6741138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 485
Target Start/End: Original strand, 6497129 - 6497209
Alignment:
| Q |
405 |
gtgcttatcatcacttatattttcattttgaccaggaccggtaacattgtcatccgctggcacatcaatattgtcaccacc |
485 |
Q |
| |
|
||||||||| |||||||||||||||| ||| | |||| |||||||| | |||||||||| ||||||||| |||||||| |
|
|
| T |
6497129 |
gtgcttatcttcacttatattttcatcttgctctcgaccagtaacattattctccgctggcatatcaatattatcaccacc |
6497209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 454
Target Start/End: Original strand, 6530811 - 6530869
Alignment:
| Q |
396 |
tgcatgccagtgcttatcatcacttatattttcattttgaccaggaccggtaacattgt |
454 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||| ||||||| |||| || ||||||| |
|
|
| T |
6530811 |
tgcatgcaagttcttatcttcacttatattttcatcttgaccaagaccagtgacattgt |
6530869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 454
Target Start/End: Original strand, 6678440 - 6678498
Alignment:
| Q |
396 |
tgcatgccagtgcttatcatcacttatattttcattttgaccaggaccggtaacattgt |
454 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| ||||||| ||| ||| ||||||| |
|
|
| T |
6678440 |
tgcatgcaagtgcttatctgcacttatattttcatcttgaccaagactggtgacattgt |
6678498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 6759937 - 6759884
Alignment:
| Q |
23 |
agggaaggaaagttggtgaggagtccacggaaaatctaataaacccataaacaa |
76 |
Q |
| |
|
||||||||||| ||||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
6759937 |
agggaaggaaatcgggtgaagagtccacgaaatatctaataaacccataaacaa |
6759884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 270 - 490
Target Start/End: Original strand, 16833 - 17052
Alignment:
| Q |
270 |
aataacatacttgtccactgcatcccagttcttcttattatcatgtacattttcgcaaccagaaacaacataattcttatttgattccatgacatcatca |
369 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||| |
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|
| T |
16833 |
aataacatctttgtccactgcatcccagttcttcttattatcatgtacatttttgcaaccagaaacaacttaattcttatttgattccatggaagcatca |
16932 |
T |
|
| Q |
370 |
ccagaaacaatagtattctcattcactgcatgccagtgcttatcatcacttatattttcattttgaccaggaccggtaacattgtcatccgctggcacat |
469 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| || |||||| |||||||||||||||| |||||||| ||| ||| |||||| |||||||||||||| |
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|
| T |
16933 |
ccagaaacaatagcactctcattcactgcatgcc-gttcttatcttcacttatattttcatcttgaccagcaccagtagcattgttatccgctggcacat |
17031 |
T |
|
| Q |
470 |
caatattgtcaccaccataag |
490 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
17032 |
caatattgtcacgaccataag |
17052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 16584 - 16676
Alignment:
| Q |
14 |
gcacagacaagggaaggaaagttggtgagga---gtccacggaaaatctaataaacccataaacaaagagagaaactcaggatccaaaaaatg |
103 |
Q |
| |
|
||||||||||||||||||| |||| || || |||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16584 |
gcacagacaagggaaggaagtttggggaagaagagtccacaaaatatctaataaacacataagtaaagagagaaactcaggatccaaaaaatg |
16676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 363 - 484
Target Start/End: Complemental strand, 8319 - 8198
Alignment:
| Q |
363 |
atcatcaccagaaacaatagtattctcattcactgcatgccagtgcttatcatcacttatattttcattttgaccaggaccggtaacattgtcatccgct |
462 |
Q |
| |
|
||||||||||| ||||| || ||||| || ||||||||||||||||||||| ||||||||||||| || |||| |||||| || |||||| ||| || |
|
|
| T |
8319 |
atcatcaccaggaacaacagcattcttatccactgcatgccagtgcttatcttcacttatatttttatcttgaattggaccgatagcattgtaatcttct |
8220 |
T |
|
| Q |
463 |
ggcacatcaatattgtcaccac |
484 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
8219 |
ggcacatcaatattatcaccac |
8198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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