View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_low_5 (Length: 487)
Name: NF9870_low_5
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 39921090 - 39920619
Alignment:
| Q |
18 |
tgttgtggcgtgatgttacttttaaggatgaaaattaactgaatggtgacttcctagttagttaaagtgactagtccatgagtccatgtacggtgtgttt |
117 |
Q |
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| T |
39921090 |
tgttgtggcgtgatgttacttttaaggatgaaaattaactgaatggtgacttcctagttagttaaagtgactagtccatgagtccatgtacggtgtgttt |
39920991 |
T |
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| Q |
118 |
ctaattgtggctgaaaatgacaaaaattcaagaaattaaactaa----taatagccttcactatccaatatactacagtacttatatatgagataatcac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39920990 |
ctaattgtggctgaaaatgacaaaaattcaagaaattaaactaatacttaatagccttcactatccaaaatactacagtacttatatatgagataatcac |
39920891 |
T |
|
| Q |
214 |
aattttcttcttaggatgtgtcatagagtttgtatgaactatggactacataacatgggttttcggttgccattagtcatgtcatgtttgcttccnnnnn |
313 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39920890 |
aattttcttcttaggatgtgtcatagagtgtgtatgaactatggacaacataacatgggttttctgttgccattagtcatgtcatgtttgcttcc----- |
39920796 |
T |
|
| Q |
314 |
nnnnnnnnnnnnnnctgctacgttgtgtaaaatccacaaagtatgatcacttaatacaacttta---tatatagtgaacaaaactagg--tcacgcttat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || |
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| T |
39920795 |
tgttgtgtgttgtgctgctacgttgtgtaaaatccacaaagtatgatcacttaatacaactttatattatatagtgaacaaaactaggtctcacgctcat |
39920696 |
T |
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| Q |
409 |
aaattgcattgtgatttgttgagccttgaacatttcttagaagaatgggaatatgcgtacaaaatatctcacctatg |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39920695 |
aaattgcattgtgatttgttgagccttgaacatttcttagaagaatgggaatatgcgtacaaaatatctcacttatg |
39920619 |
T |
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