View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_low_6 (Length: 446)
Name: NF9870_low_6
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 18269068 - 18268650
Alignment:
| Q |
18 |
gctatatcacgaaatcgttccatattcctcctcacaccgcgttcctctcccacattattaatagcatttctagcttgttctacaacattcggtacttcat |
117 |
Q |
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| T |
18269068 |
gctatatcacgaaatcgttccatattcctcctcacaccgcgttcctctctcacattattaatagcatttctagcttcttctacaacattcggtacttcat |
18268969 |
T |
|
| Q |
118 |
ttctctcttccacaatattctcaactacgccttcagattccgcaccgaattcgttattttcattttccttttcatcagcaacaacaacaggttccttccc |
217 |
Q |
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| T |
18268968 |
ttctctcttccacaatattctcaactacgccttcagattccacaccgaattcgttattttcattttccttttcatcagcgacaacaacaggttccttccc |
18268869 |
T |
|
| Q |
218 |
tttctcttctctagtcaattttcttcttccactagattctacttcatcgtttttcacttcgattttgttccttttaggagtgttgttctgagaatcatta |
317 |
Q |
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| T |
18268868 |
tttctcttctctagtcaattttcttcttccactagattctacttcatcgtttttcacttcgattttgttccttttaggagtgttgttctgagaatcatta |
18268769 |
T |
|
| Q |
318 |
tcatcaataacgatttcacgtttgagaattttcttccccgatcgcaagttcacaaaaccgttcggtatcggattaggttcggaatccgaagcggtaaggt |
417 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
18268768 |
tcatcgataacgatttcacgtttgagaattttcttccccgatcgcaagttcacaaaaccgttcggtattggattaggttcggaatccgaagcggtaagat |
18268669 |
T |
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| Q |
418 |
ttgatttatccattctctg |
436 |
Q |
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| T |
18268668 |
ttgatttatccattttctg |
18268650 |
T |
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