View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_low_7 (Length: 406)
Name: NF9870_low_7
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 7286005 - 7286366
Alignment:
| Q |
18 |
ctatgcatgcatgagtgtttgtgtcatgactcatcatcttcctttctttacctttatgaaggaaagtcacctttagcccaccaggttgtgtagggtgatc |
117 |
Q |
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| T |
7286005 |
ctatgcatgcatgagtgtttgtgtcatgactcatcatcttcctttctttacctttatgaaggagagtcacctttagcccaccaggttgtgtagggtgatc |
7286104 |
T |
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| Q |
118 |
ttgtctcctgattctcatggttcaaattgcatggttgattgtgatcttgttgataatttattaggggactaattatcaatattaatgcttatataaacta |
217 |
Q |
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| T |
7286105 |
ttgtctcctgattct--------------catggttgattgtgatcttgttgataatttattaggggactaattatcaatattaatgcttatataaacta |
7286190 |
T |
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| Q |
218 |
atgttaaaagtttggtaactcacttgggttgacctagtggtattgatttgagatatgaaaatgtgcttctctttaaggtttcttnnnnnnnntgttacaa |
317 |
Q |
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| T |
7286191 |
atgttaaaagcttggtatcccacttaggttgacctagtggtattggtttgggatctgggagtgtgctcctctttaaagtctcttaaaaaaaatgttacaa |
7286290 |
T |
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| Q |
318 |
gcttgttttgatatctgatcgtgcgattttggctcttattttttgagccattttgacacataaaattttttactct |
393 |
Q |
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| T |
7286291 |
gcttgttttgatatctgatcgtgcgattttggctcttattttttgagccattttgacacataaaattttttactct |
7286366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 6986194 - 6986228
Alignment:
| Q |
253 |
agtggtattgatttgagatatgaaaatgtgcttct |
287 |
Q |
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| T |
6986194 |
agtggtattgatttgagatttgaaaatgtgcttct |
6986228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 20678106 - 20678077
Alignment:
| Q |
242 |
tgggttgacctagtggtattgatttgagat |
271 |
Q |
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| T |
20678106 |
tgggttgacctagtggtattgatttgagat |
20678077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 3001379 - 3001416
Alignment:
| Q |
234 |
aactcacttgggttgacctagtggtattgatttgagat |
271 |
Q |
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| T |
3001379 |
aactcacttgggttggcctagtggtattgacttgagat |
3001416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 14787413 - 14787376
Alignment:
| Q |
233 |
taactcacttgggttgacctagtggtattgatttgaga |
270 |
Q |
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| T |
14787413 |
taactcacttgagttgacctagtggtattgacttgaga |
14787376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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