View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_low_9 (Length: 402)
Name: NF9870_low_9
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 36537083 - 36537419
Alignment:
| Q |
1 |
gcatggaatgagatggttgttctaatcatttgcttttcaaatactannnnnnn-cttaagccataaaaacgatacattcacaattagctgcataagtgag |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36537083 |
gcatggaatgagatggttgttctaatcatttgcttttcaaatactattttttttcttaagccataaaaacgatacattcacaattagctgcataagtgag |
36537182 |
T |
|
| Q |
100 |
agagataatgctgaatatcaatatcaaactttgcttacagtagacttaaaatagtacctacagtggcccctaaagaaaggtctcaaggaaaatatcatca |
199 |
Q |
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|||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36537183 |
agagatgatgctgaataacaatatcaaactttgcttacaatagacttaaaatagtacctacagtgggccctaaagaaaggtctcaaggaaaatatcatca |
36537282 |
T |
|
| Q |
200 |
agacccttctagcggtttccctaatcgtcctcgttatgggtacatctactcttcgtagaaaatctacgatcttccactatgattgaatgtttgcacagtg |
299 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36537283 |
agacccttctagcggtttccctaatcttcctcgttatgggtacatctactcttcgtagaaaatctacgatcttccactatgattgaatgtttgcacagtg |
36537382 |
T |
|
| Q |
300 |
tgctaaaaggtttgattacaagtaattaatgaagctt |
336 |
Q |
| |
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| T |
36537383 |
tgctaaaaggtttgattacaagtaattaatgaagctt |
36537419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 36537486 - 36537542
Alignment:
| Q |
336 |
tctaagtctgaaatccatgaactcgacacctaaatcatttaaatcttcaatcctatg |
392 |
Q |
| |
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|
| T |
36537486 |
tctaagtctgaaatccatgaactcgacacctaaatcatttaaatcttcaatcctatg |
36537542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 10231534 - 10231604
Alignment:
| Q |
258 |
aaaatctacgatcttccactatgattgaatgtttgcacagtgtgctaaaaggtttgattacaagtaattaa |
328 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |
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| T |
10231534 |
aaaatccacggtcttccactatgattgaatgtttgcacagtgtgctacaacgtttgattacaagcaattaa |
10231604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 31633822 - 31633885
Alignment:
| Q |
258 |
aaaatctacgatcttccactatgattgaatgtttgcacagtgtgctaaaaggtttgattacaag |
321 |
Q |
| |
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|
| T |
31633822 |
aaaatccacgaccttccactatgattgaaagtttgcacaatgtgctacaaggtttgatgacaag |
31633885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 328
Target Start/End: Complemental strand, 23333946 - 23333864
Alignment:
| Q |
247 |
actcttcgtagaaaa-tctacgatcttccactatgattgaatgtttgcacagtgtgctaaaaggtttgattacaagtaattaa |
328 |
Q |
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||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||| |
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| T |
23333946 |
actcttcgtagaaaaatctacaatcttccacaatgattgaatgtttgcacgatgtgcaacaaggtttgattacaagtaattaa |
23333864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 17275121 - 17275062
Alignment:
| Q |
277 |
tatgattgaatgtttgcacagtgtgctaaaaggtttgattacaagtaattaatgaagctt |
336 |
Q |
| |
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|||||||||||||||||||| || ||| |||||||||| |||||||||||| ||||||| |
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|
| T |
17275121 |
tatgattgaatgtttgcacaaagttctacaaggtttgataacaagtaattaacgaagctt |
17275062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 336
Target Start/End: Complemental strand, 16717232 - 16717131
Alignment:
| Q |
237 |
gggtacatctactcttcgtagaaaat-ctacgatcttccactatgattgaatgtttgcacagtg-tgctaaaaggtttgattacaagtaattaatgaagc |
334 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||| ||||||||| || ||||||||||||||| | || || |||||||||||||||||| |||||||||| |
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|
| T |
16717232 |
gggtacattcactctttgtagaaaattctacggtcttccactttgcttgaatgtttgcacactaatgttataaggtttgattacaagtagttaatgaagc |
16717133 |
T |
|
| Q |
335 |
tt |
336 |
Q |
| |
|
|| |
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|
| T |
16717132 |
tt |
16717131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 13794830 - 13794901
Alignment:
| Q |
258 |
aaaatctacgatcttccactatgattgaatgtttgcacagt-gtgctaaaaggtttgattacaagtaattaa |
328 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
13794830 |
aaaatctacgactttccactatgaatgaatgtttgcacccaagtgctacaaggtttgattacaagtaattaa |
13794901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 16241941 - 16241990
Alignment:
| Q |
248 |
ctcttcgtagaaaa-tctacgatcttccactatgattgaatgtttgcaca |
296 |
Q |
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|||||||||||||| |||| || ||||||||||||||||||||||||||| |
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| T |
16241941 |
ctcttcgtagaaaaatctatgaccttccactatgattgaatgtttgcaca |
16241990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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