View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9871_high_1 (Length: 502)
Name: NF9871_high_1
Description: NF9871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9871_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 9 - 487
Target Start/End: Complemental strand, 46016898 - 46016419
Alignment:
| Q |
9 |
agcagagatttagaaagagtagttatttgattgtacatgttaaacagtgtcacctgttagaaattaggaaaagttgtttcatagg-tacacaatttgtac |
107 |
Q |
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| T |
46016898 |
agcagagatttagaaagagtagttatttgattgtacatgttaaacagtgtcacctgttagaaattaggaaaagttgtttcatagggtacacaatttgtac |
46016799 |
T |
|
| Q |
108 |
actccttgagagtggtttggtagcacaagacttgatgaatttatgccgcattaaagagattcttctcatgtatatttcaaaagaaaaataaaagttgttt |
207 |
Q |
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| T |
46016798 |
actccttgagagtggtttggtagcacaagacttgatgaattaatgccgcattaaagagattcttctcatgtatatttcaaaagaaaaataaaagttgttt |
46016699 |
T |
|
| Q |
208 |
catgtacttgagttatgaagtaagagagatggtgaaacttcaatatcaaaatgtaaacaaacatttcagtcctttgttattatagcatcataatgtaaca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46016698 |
catgtacttgagttatgaagtaagagagatggtgaaacttcaatatcgaaatgtaaacaaacatttcagtcctttgttattatagcatcataatgtaaca |
46016599 |
T |
|
| Q |
308 |
aaattttaaatatggcattaagtgtttcttctgcaggtagtttattggctaaattgacaaaataaaacacattagatgattaaattaactaatgaaaaat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46016598 |
aaattttaaatatggcattaagtgtttcttctgcaggtagtttattggctaaattgacaaaataaaacacattagatgattaaattaactaatgaaaaat |
46016499 |
T |
|
| Q |
408 |
acatttgatgatgaaatgataaataaaagatacattcaaatatatttttgtaattttggtagagattacagtaacaaatt |
487 |
Q |
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| T |
46016498 |
acatttgatgatgaaatgacaaataaaagatacattcaaatatattcttgtaattttggtagagattacagtaacaaatt |
46016419 |
T |
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