View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9871_high_2 (Length: 476)
Name: NF9871_high_2
Description: NF9871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9871_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 216 - 466
Target Start/End: Complemental strand, 38324542 - 38324292
Alignment:
| Q |
216 |
gccaccaaaaatgaaaatgcttgactgaaatagcaaaaaacaccgtttttcaattnnnnnnnnggcagcaaagaaacttacattgatacagaagaagtgt |
315 |
Q |
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| T |
38324542 |
gccaccaaaaatgaaaatgcttgactgaaatagcaaaaaacaccgtttttcaattaaaaaaaaggcagcaaagaaacttacattgatacagaagaagtgt |
38324443 |
T |
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| Q |
316 |
gtgattaatctgatgcctgcaaagtttccctctctcagaggggagccaaggctgcatttgagtgcacttcttaacacttgtaacaccgatattttaaact |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
38324442 |
gtgattaatctgatgcctgcaaagtttccctctctcagaggggagccaaggctgcatttgagtgcacttatttacacttgtaacaccgatattttaaact |
38324343 |
T |
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| Q |
416 |
gaaggcgtgtccaacaatgttgggcactcaaaattcgtgtttgatgtccat |
466 |
Q |
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| T |
38324342 |
gaaggtgtgtccaacaatgttgggcactcaaaattcgtgtttggtgtccat |
38324292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 38325483 - 38325284
Alignment:
| Q |
18 |
agtgaattcaaacataattgtatgaaaataacttggatagaaataaaactcaatcacataggaagagagcaacagaggatactatagctacttattcatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38325483 |
agtgaattcaaacataattgtatgaaaataacttcgattgaaataaaactcaatcacataggaagagagcaacagaggatactatagctacttattcatt |
38325384 |
T |
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| Q |
118 |
gaattttcttaaatttgtatttgttttagtcattgattactttgaagtatattgtattggttaccgtcattgttcttaaacctagccaattagaatttgc |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38325383 |
gaattttcttaaatctgtatttgttttagtcattgattactttgaagtatattgtattggttacagtcattgttcttaaacctagccaattagaatttgc |
38325284 |
T |
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