View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9871_high_3 (Length: 419)
Name: NF9871_high_3
Description: NF9871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9871_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 3126335 - 3126727
Alignment:
| Q |
18 |
agcaatagcacgtagtagctggaattgagtgtgatgtaaatattttgttcatcattgtgccatctagtatgcaagagctagaaaaaggataatataatct |
117 |
Q |
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| T |
3126335 |
agcaatatcacgtagtagctggaattgagtgtgatgtaaatattttgttcatcattgtgccatctagtatgcaagagctagaaaaaggataatatgatct |
3126434 |
T |
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| Q |
118 |
gcatcttttagccacaattaccaaatatgttctaattgactattgcatatgtaagtttacatggcttgaaataaaggaagtcaactaaatgaatgcatat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3126435 |
gcatcttttagccacaattaccaaatatgttctaattgactattgcatatgtaagtttacatggcttgaaataaaggaagtcaactaaatgaatgcatat |
3126534 |
T |
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| Q |
218 |
cattcgctgaattttatgtagaataaaataaatataatgtaactgaatatcatgtagagtctgaatagattatagaaatagagctcatctatcactttcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3126535 |
cattcgctgaattttatgtagaataaaataaatataatgtaactgaatatcatgtagagtctgaatagattatagaaatagagctcatctatcactttcc |
3126634 |
T |
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| Q |
318 |
gtcactaggtgatgtttataaaacccaagtacatctgtgatattagatatactaaacattagaacttgtacatccatcacacgagtcctatgc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3126635 |
gtcactaggtgatgtttataaaacccaagtacatctgtgatattagatatactaaacattagaacttgtacatccatcacacgagtcctatgc |
3126727 |
T |
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