View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9871_low_12 (Length: 226)
Name: NF9871_low_12
Description: NF9871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9871_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 21434482 - 21434682
Alignment:
| Q |
17 |
aaatgttgctaacaaatgttgtaggtatggcggatgcataaagataatctgatattgatggagagataccaccttttcaattcaagttgccaggaattcg |
116 |
Q |
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| T |
21434482 |
aaatgttgctaacaaatgttgtaggtatggcggatgcataaagataatctgatattgatggagagataccactttttcaattcaagttgccaggaattcg |
21434581 |
T |
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| Q |
117 |
acctcaattgcaaatcacttgctgagttgcatattgatgaaaatgaaactgatggagcgcttgccagaattctcaaagtgcttagacatatcaacaccaa |
216 |
Q |
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| T |
21434582 |
acctcaattgcaaatcacttgctgagttgcatattgatgaaaatgaaactgatggagcgcttgccagaattctcaaagtgcttagacatatcaactccaa |
21434681 |
T |
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| Q |
217 |
a |
217 |
Q |
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| T |
21434682 |
a |
21434682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 26990328 - 26990509
Alignment:
| Q |
30 |
aaatgttgtaggtatggcggatgcataaagataatctgatattgatggagagataccaccttttcaattcaagttgccaggaattcgacctcaattgcaa |
129 |
Q |
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| T |
26990328 |
aaatgttgtaggtatggccgaagtacagagataatctgatattgatggagagataccactttttcaattcaagttgtcaggacttcggcctccaatgcaa |
26990427 |
T |
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| Q |
130 |
atcacttgctgagttgcatattgatgaaaatgaaactgatggagcgcttgccagaattctcaaagtgcttagacatatcaac |
211 |
Q |
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| T |
26990428 |
atcacttgctgcattgaatattgatgagaatgaaaatgatggtgcgcttgccaaaatactcgaagtgctaagacagatcaac |
26990509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 211
Target Start/End: Original strand, 27029211 - 27029391
Alignment:
| Q |
31 |
aatgttgtaggtatggcggatgcataaagataatctgatattgatggagagataccaccttttcaattcaagttgccaggaattcgacctcaattgcaaa |
130 |
Q |
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| T |
27029211 |
aatgttgtaggtatggccgaagtacagagataatctgatattgatggagagataccactttttcaattcaagttgtcaggactttggcctccaatgcaaa |
27029310 |
T |
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| Q |
131 |
tcacttgctgagttgcatattgatgaaaatgaaactgatggagcgcttgccagaattctcaaagtgcttagacatatcaac |
211 |
Q |
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| T |
27029311 |
tcacttgctgcattgaatattgatgagaatgaaactgatggtgcgcttgccaaaatactcgaagtgctaagacagatcaac |
27029391 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 27074576 - 27074423
Alignment:
| Q |
58 |
agataatctgatattgatggagagataccaccttttcaattcaagttgccaggaattcgacctcaattgcaaatcacttgctgagttgcatattgatgaa |
157 |
Q |
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| T |
27074576 |
agataatctgatattgatggagagataccactttttcaattcaagttgtcaggactttggcctccaacgcaaatcacttgttgcattgcatattgatgag |
27074477 |
T |
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| Q |
158 |
aatgaaactgatggagcgcttgccagaattctcaaagtgcttagacatatcaac |
211 |
Q |
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| T |
27074476 |
aatgaaactgatggtgcgcttgccaaaatactcgaagtgctaagacagatcaac |
27074423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 27153307 - 27153358
Alignment:
| Q |
17 |
aaatgttgctaacaaatgttgtaggtatggcggatgcataaagataatctga |
68 |
Q |
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| T |
27153307 |
aaatgttgctaacaaatgttgtaggtatggcagaagcacaaagataatctga |
27153358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 34692585 - 34692766
Alignment:
| Q |
30 |
aaatgttgtaggtatggcggatgcataaagataatctgatattgatggagagataccaccttttcaattcaagttgccaggaattcgacctcaattgcaa |
129 |
Q |
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|||||||||||||||||| || | | | ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||| | ||||| |
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| T |
34692585 |
aaatgttgtaggtatggccgaagtacagagataatctgatattgatggagagataccactttttcaattcaagttgtcaggacttcggcctccaatgcaa |
34692684 |
T |
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| Q |
130 |
atcacttgctgagttgcatattgatgaaaatgaaactgatggagcgcttgccagaattctcaaagtgcttagacatatcaac |
211 |
Q |
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| T |
34692685 |
atcacttgctgcattgaatattgatgagaatgaaattgatggtgcgcttgccaaaatactcgaagtgctaagacagatcaac |
34692766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 50172351 - 50172191
Alignment:
| Q |
20 |
tgttgctaacaaatgttgtaggtatggcggatgcataaagataatctgatattgatggagagataccaccttttcaattcaagttgccaggaattcgacc |
119 |
Q |
| |
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||||||||| |||||||||||| |||| || ||||||| | ||||||||||||||||| |||||||| |||| |||||| || | | | || | | |
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| T |
50172351 |
tgttgctaaaaaatgttgtaggcatggatgaagcataaaaacaatctgatattgatggaaagataccatttttttgcttcaagctgtcggcagtttggct |
50172252 |
T |
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| Q |
120 |
tcaattgcaaatcacttgctgagttgcatattgatgaaaatgaaactgatggagcgcttgc |
180 |
Q |
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| T |
50172251 |
tcaattgcaaatctcttgctgaaacgaagagcgatgaaaatgaaacagatggagcacttgc |
50172191 |
T |
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