View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9871_low_4 (Length: 401)

Name: NF9871_low_4
Description: NF9871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9871_low_4
NF9871_low_4
[»] chr8 (4 HSPs)
chr8 (1-216)||(27183431-27183646)
chr8 (61-216)||(27230690-27230845)
chr8 (88-126)||(3368294-3368332)
chr8 (88-124)||(4027476-4027512)
[»] scaffold0129 (2 HSPs)
scaffold0129 (86-124)||(17612-17650)
scaffold0129 (76-124)||(33998-34046)
[»] chr5 (3 HSPs)
chr5 (88-126)||(30651129-30651167)
chr5 (88-126)||(31777475-31777513)
chr5 (86-128)||(42630072-42630114)
[»] chr1 (1 HSPs)
chr1 (88-122)||(344684-344718)
[»] chr2 (3 HSPs)
chr2 (88-124)||(34324900-34324936)
chr2 (77-124)||(27724744-27724791)
chr2 (88-124)||(27717432-27717468)
[»] chr7 (1 HSPs)
chr7 (88-125)||(25627761-25627798)
[»] chr3 (1 HSPs)
chr3 (88-125)||(2703335-2703372)
[»] chr6 (2 HSPs)
chr6 (100-128)||(25319782-25319810)
chr6 (100-128)||(26149475-26149503)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27183646 - 27183431
Alignment:
Q  1 caaaatgatgcaggtaacatacgtaaatcttctttttgagaataatgagttgataaataacgataacgaacatgccgaataaccgtgtagtcatctctga 100  Q
    ||||||||  ||||||||||  ||||||||||||||  ||||||||||||||||| |||||||||  ||||||||||||||||| |||||||||||||||    
T  27183646 caaaatgagtcaggtaacatgagtaaatcttcttttcaagaataatgagttgatatataacgatattgaacatgccgaataaccttgtagtcatctctga 27183547  T
Q  101 catggtcataaccaaatccatgaagacacaaggtaccataaacatggatattaggtagatgctctacaagaccaggagggatgaccttaacttccccagt 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27183546 catggtcataaccaaatccatgaagacacaaggtaccaaaaacatggatattaggtagatgctctacaagaccaggagggatgaccttaacttccccagt 27183447  T
Q  201 aactgggttccaaagt 216  Q
    ||||||||||||||||    
T  27183446 aactgggttccaaagt 27183431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 61 - 216
Target Start/End: Original strand, 27230690 - 27230845
Alignment:
Q  61 cgataacgaacatgccgaataaccgtgtagtcatctctgacatggtcataaccaaatccatgaagacacaaggtaccataaacatggatattaggtagat 160  Q
    ||||||| |||||| ||||||| | ||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||| ||||     
T  27230690 cgataaccaacatgacgaataagcttgtagtcatctttgacatggtcatatccaaatccatgaagacaaagggtaccataaacatgaatattagatagac 27230789  T
Q  161 gctctacaagaccaggagggatgaccttaacttccccagtaactgggttccaaagt 216  Q
     ||||||||||||||||||||| ||||||||||||  |||||| ||||||||||||    
T  27230790 actctacaagaccaggagggattaccttaacttcctgagtaacagggttccaaagt 27230845  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 3368294 - 3368332
Alignment:
Q  88 tagtcatctctgacatggtcataaccaaatccatgaaga 126  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  3368294 tagtcatctctaacttggtcataaccaaatccatgaaga 3368332  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 4027512 - 4027476
Alignment:
Q  88 tagtcatctctgacatggtcataaccaaatccatgaa 124  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  4027512 tagtcatctctaacacggtcataaccaaatccatgaa 4027476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 17612 - 17650
Alignment:
Q  86 tgtagtcatctctgacatggtcataaccaaatccatgaa 124  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  17612 tgtagtcatctctaacatggtcataaccaaatccatgaa 17650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 33998 - 34046
Alignment:
Q  76 cgaataaccgtgtagtcatctctgacatggtcataaccaaatccatgaa 124  Q
    ||||| ||| ||||||||||||| ||||| |||||||||||||||||||    
T  33998 cgaatgaccttgtagtcatctctaacatgctcataaccaaatccatgaa 34046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 30651167 - 30651129
Alignment:
Q  88 tagtcatctctgacatggtcataaccaaatccatgaaga 126  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  30651167 tagtcatctctaacatggtcataaccaaatccatgaaga 30651129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 31777513 - 31777475
Alignment:
Q  88 tagtcatctctgacatggtcataaccaaatccatgaaga 126  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  31777513 tagtcatctctaacatggtcataaccaaatccatgaaga 31777475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 42630072 - 42630114
Alignment:
Q  86 tgtagtcatctctgacatggtcataaccaaatccatgaagaca 128  Q
    ||||||||||| | || ||||||||||||||||||||||||||    
T  42630072 tgtagtcatctttaacttggtcataaccaaatccatgaagaca 42630114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 344718 - 344684
Alignment:
Q  88 tagtcatctctgacatggtcataaccaaatccatg 122  Q
    |||||||||||||||||||||||||||||||||||    
T  344718 tagtcatctctgacatggtcataaccaaatccatg 344684  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 34324936 - 34324900
Alignment:
Q  88 tagtcatctctgacatggtcataaccaaatccatgaa 124  Q
    ||||||||||| |||||||||||||||||||||||||    
T  34324936 tagtcatctctaacatggtcataaccaaatccatgaa 34324900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 27724744 - 27724791
Alignment:
Q  77 gaataaccgtgtagtcatctctgacatggtcataaccaaatccatgaa 124  Q
    |||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  27724744 gaatgaccttgtagtcatctcgaacatggtcataaccaaatccatgaa 27724791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 27717432 - 27717468
Alignment:
Q  88 tagtcatctctgacatggtcataaccaaatccatgaa 124  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  27717432 tagtcatctctaacatggtcatagccaaatccatgaa 27717468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 25627798 - 25627761
Alignment:
Q  88 tagtcatctctgacatggtcataaccaaatccatgaag 125  Q
    |||||||||||  |||||||||||||||||||||||||    
T  25627798 tagtcatctctagcatggtcataaccaaatccatgaag 25627761  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 2703372 - 2703335
Alignment:
Q  88 tagtcatctctgacatggtcataaccaaatccatgaag 125  Q
    |||||||| || ||||||||||||||||||||||||||    
T  2703372 tagtcatccctaacatggtcataaccaaatccatgaag 2703335  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 25319782 - 25319810
Alignment:
Q  100 acatggtcataaccaaatccatgaagaca 128  Q
    |||||||||||||||||||||||||||||    
T  25319782 acatggtcataaccaaatccatgaagaca 25319810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 26149475 - 26149503
Alignment:
Q  100 acatggtcataaccaaatccatgaagaca 128  Q
    |||||||||||||||||||||||||||||    
T  26149475 acatggtcataaccaaatccatgaagaca 26149503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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