View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9871_low_6 (Length: 377)
Name: NF9871_low_6
Description: NF9871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9871_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 363
Target Start/End: Complemental strand, 22553079 - 22552724
Alignment:
| Q |
7 |
catagggcagtggtgaacaacaagacaacaagaaaatctctagctttctttttgtgtccaaaaggtgataaggtggtttgtccaccaagtgaattggtga |
106 |
Q |
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| T |
22553079 |
catagggcagtggtgaacaacaagacaacaagaaaatctctagctttctttttgtgtccaaaaggtgataaggtggtttgtccaccaagtgaattggtga |
22552980 |
T |
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| Q |
107 |
gtgatttgacaccaagaatctatcctgattttacatggcctatgcttcttgagttcactcaaaaacattatagagctgatatgagaacacttgaggcttt |
206 |
Q |
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| T |
22552979 |
gtgatttgacaccaagaatctatcctgattttacatggcctatgcttcttgagttcactcaaaaatattatagagctgatatgagaacacttgaggcttt |
22552880 |
T |
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| Q |
207 |
tacaaaatggatccaacaaaaaagtagctgaaatttcaagctcttgaatgacaaattattagccattgagaaccctattagaaaagtgaccaatcatgtg |
306 |
Q |
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| T |
22552879 |
tacaaaatggatccaacaaaaaagtagctgaaatttcaagctcttg-atgacaaattattagccattgagaaccctattagaaaagtgaccaatcatgtg |
22552781 |
T |
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| Q |
307 |
gaagtacaagtgtaattcatgtcttgaaaggtctttgaagctagtaagacagaagtg |
363 |
Q |
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| T |
22552780 |
gaagtacaagtgtaattcatgtcttgaaaggtctctgaagctagtaagacagaagtg |
22552724 |
T |
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Back To:
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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 46104135 - 46104329
Alignment:
| Q |
6 |
gcatagggcagtggtgaacaacaagacaacaagaaaatctctagctttctttttgtgtccaaaaggtgataaggtggtttgtccaccaagtgaattggtg |
105 |
Q |
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||||||||||||||| |||| | | | ||||| |||||||| |||||||||||||||||| | ||||||| ||||| ||||||| ||||||||||| |
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| T |
46104135 |
gcatagggcagtggtaaacagcgaaaagacaaggaaatctcttgctttctttttgtgtccattaagtgataaagtggtaactccaccatgtgaattggtg |
46104234 |
T |
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| Q |
106 |
agtgatttgacaccaagaatctatcctgattttacatggcctatgcttcttgagttcactcaaaaacattatagagctgatatgagaacacttga |
200 |
Q |
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||| | ||||| ||||| |||||||| |||||| ||||| | |||||||| ||||| || || || ||||||||||| | ||||||||| |
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| T |
46104235 |
gacaattacaacccaaggatctaccctgatttcacatggtctatgttgcttgagtttactcagaagcactacagagctgatatcaaaacacttga |
46104329 |
T |
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