View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9871_low_9 (Length: 305)

Name: NF9871_low_9
Description: NF9871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9871_low_9
NF9871_low_9
[»] chr8 (14 HSPs)
chr8 (2-299)||(14636987-14637285)
chr8 (4-289)||(14629266-14629573)
chr8 (149-287)||(14629588-14629740)
chr8 (126-209)||(12078944-12079027)
chr8 (126-211)||(12889149-12889233)
chr8 (162-204)||(15617898-15617940)
chr8 (162-204)||(15629533-15629575)
chr8 (162-204)||(15641074-15641116)
chr8 (162-204)||(15653375-15653417)
chr8 (167-267)||(12062471-12062578)
chr8 (167-204)||(12067236-12067273)
chr8 (167-211)||(15970630-15970674)
chr8 (162-204)||(15609512-15609554)
chr8 (241-289)||(14640734-14640783)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 299
Target Start/End: Original strand, 14636987 - 14637285
Alignment:
Q  2 agaacaaaatcaatagcataatctgaattcataaaatgaaccataaactgtttaaaagtgtcnnnnnnn-ctaagatgccaaattagccaccgatattga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| |||||    
T  14636987 agaacaaaatcaatagcataatctgaattcataaaatgaaccataaactgtttaaaagtgtcttttttttctaagatgccaaattagccaccgaaattga 14637086  T
Q  101 caacattaaaagaagcacgtcacacgtcaacaacatcagaccaatccaagtgggttgaaaactatttaaaagataatttgagacatgatcaatatcaata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  14637087 caacattaaaagaagcacgtcacacgtcaacaacatcagaccaacccaagtgggtcgaaaactatttaaaagataatttaagacatgatcaatatcaata 14637186  T
Q  201 aatatcaaaatgtcatcattaaattttgataatttcaaactaaacataaaatctagattaaaattttgagaaatctttttgaacttctgcctttgcttc 299  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  14637187 catatcaaaatgtcatcattaaaatttgataatttcaaactaaacataaaatctagattaaaattttgagaaatccttttgaacttctgactttacttc 14637285  T

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Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 14629266 - 14629573
Alignment:
Q  4 aacaaaatcaatagcataatctgaattcataaaatgaa----------ccataaactgtttaaaagtgtcnnnnnnnctaagatgccaaattagccaccg 93  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||| ||||||||| |        ||||||||||||||||| ||||     
T  14629266 aacaaaatcaatagcataatctgaattcataaaatgaaataagctgacccataaactatttaaaagttt-tttttttctaagatgccaaattagtcacca 14629364  T
Q  94 atattgacaacattaaaagaagcacgtcacacgtcaacaacatcagaccaatccaagtgggttgaaaactatttaaaagataatttgagacatgatcaat 193  Q
    | | ||||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  14629365 aaagtgacaacattaaaagaagcacatcacaagtcaacaacatcataccaacccaagtgggttggaaactatttaaaagataatatgagacatgatcaat 14629464  T
Q  194 atcaataaatatcaa-------aatgtcatcattaaattttgataatttcaaac------taaacataaaatctagattaaaattttgagaaatcttttt 280  Q
    || ||||||||||||       |||| |||||||| | ||||||||||||||||      |||||||||||||||||||||||||||| |||||||||||    
T  14629465 attaataaatatcaaaatctagaatgccatcattagaatttgataatttcaaactaaacataaacataaaatctagattaaaattttgcgaaatcttttt 14629564  T
Q  281 gaacttctg 289  Q
    |||||||||    
T  14629565 gaacttctg 14629573  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 149 - 287
Target Start/End: Original strand, 14629588 - 14629740
Alignment:
Q  149 agtgggttgaaaactatttaaaagataatttgagacatgatcaatatcaataaatatcaa-------aatgtcatcattaaattttgataatttcaaac- 240  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||       |||| |||||||| | ||||||||||||||||     
T  14629588 agtgggttggaaactatttaaaagataatgtgagacatgatcaatatcaataaatatcaaaatctagaatgccatcattagaatttgataatttcaaact 14629687  T
Q  241 ------taaacataaaatctagattaaaattttgagaaatctttttgaacttc 287  Q
          |||||||||||||||||||||||||||| ||||||||||||||||||    
T  14629688 aaacattaaacataaaatctagattaaaattttgcgaaatctttttgaacttc 14629740  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 12078944 - 12079027
Alignment:
Q  126 gtcaacaacatcagaccaatccaagtgggttgaaaactatttaaaagataatttgagacatgatcaatatcaataaatatcaaa 209  Q
    ||||||| |||||  | ||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  12078944 gtcaacaccatcaatctaatccaagtggctagaaaactatttaaaaaataatttgagacatgatcaaaatcaataaatatcaaa 12079027  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 12889149 - 12889233
Alignment:
Q  126 gtcaacaacatcagaccaatccaagtgggttgaaaactatttaaaagataatttgagacatgatcaatatcaataaatatcaaaat 211  Q
    ||||||||||||| ||||| |||| ||| |||  ||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  12889149 gtcaacaacatcataccaacccaaatggattggcaactatttaaaagataatt-gagacatgatcattatcaataaatatcaaaat 12889233  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 15617940 - 15617898
Alignment:
Q  162 ctatttaaaagataatttgagacatgatcaatatcaataaata 204  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  15617940 ctatgtaaaagataatttgaaacatgatcaatatcaataaata 15617898  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 15629575 - 15629533
Alignment:
Q  162 ctatttaaaagataatttgagacatgatcaatatcaataaata 204  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  15629575 ctatgtaaaagataatttgaaacatgatcaatatcaataaata 15629533  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 15641116 - 15641074
Alignment:
Q  162 ctatttaaaagataatttgagacatgatcaatatcaataaata 204  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  15641116 ctatgtaaaagataatttgaaacatgatcaatatcaataaata 15641074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 15653417 - 15653375
Alignment:
Q  162 ctatttaaaagataatttgagacatgatcaatatcaataaata 204  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  15653417 ctatgtaaaagataatttgaaacatgatcaatatcaataaata 15653375  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 12062471 - 12062578
Alignment:
Q  167 taaaagataatttgagacatgatcaatatcaataaatatcaaaat-------gtcatcattaaattttgataatttcaaactaaacataaaatctagatt 259  Q
    ||||||||||||||| |||||||||||||||| ||||||| ||||       ||||||| |  | |||||| ||||||  |||||||||||||||| |||    
T  12062471 taaaagataatttgaaacatgatcaatatcaacaaatatcgaaatcatgaacgtcatcactttaatttgatgatttcaccctaaacataaaatctaaatt 12062570  T
Q  260 aaaatttt 267  Q
    ||| ||||    
T  12062571 aaattttt 12062578  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 12067236 - 12067273
Alignment:
Q  167 taaaagataatttgagacatgatcaatatcaataaata 204  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  12067236 taaaagataatttgaaacatgatcaatatcaataaata 12067273  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 15970630 - 15970674
Alignment:
Q  167 taaaagataatttgagacatgatcaatatcaataaatatcaaaat 211  Q
    ||||||||||||||| |||||| |||||||||||||| |||||||    
T  15970630 taaaagataatttgaaacatgaacaatatcaataaatttcaaaat 15970674  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 15609554 - 15609512
Alignment:
Q  162 ctatttaaaagataatttgagacatgatcaatatcaataaata 204  Q
    |||| ||||||||||||| | ||||||||||||||||||||||    
T  15609554 ctatgtaaaagataatttaaaacatgatcaatatcaataaata 15609512  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 14640734 - 14640783
Alignment:
Q  241 taaacataaaatctagattaaaatttt-gagaaatctttttgaacttctg 289  Q
    ||||||||||||||| |||||| |||| ||| ||||||||||||||||||    
T  14640734 taaacataaaatctaaattaaattttttgagcaatctttttgaacttctg 14640783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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