View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9872_high_1 (Length: 421)
Name: NF9872_high_1
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_high_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 66 - 421
Target Start/End: Original strand, 4074772 - 4075127
Alignment:
| Q |
66 |
gtatttttaagggatgattgactcaaacttgtgacgactaattaagctgaaaaatgtttgtatcatcttatctaaatagtgcagtttgaattagagttaa |
165 |
Q |
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| T |
4074772 |
gtatttttaagggatgattgactcaaacttgagacaactaattaagctgaaaaatgtttgtatcatcttatctaaatagtgcagtttgaattagagttaa |
4074871 |
T |
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| Q |
166 |
cgtaaaactttgtcgaacaattttttaaaagattttaaagacttgttgactaaagggctctaacaagaatattttggatctaactactgtcgccattact |
265 |
Q |
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| T |
4074872 |
cgtataactttgtcgaacaattttttaaaagcttttaaagacttgttgactaaagggctctaacaagaatattttggatccaactactgtcgccattact |
4074971 |
T |
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| Q |
266 |
tttatgtcattcagcttgaaactaggtctaattttttgtttaataaggtaaacaagtatcattgtgatgaaaaagatacatgacattnnnnnnnnnncac |
365 |
Q |
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| T |
4074972 |
tttatgtcattcagcttgaaactaggtctaattttttgtttaataaggtaaacaagtatcattgtgatgaaaaagatacatgacattaaaaaaaaaacac |
4075071 |
T |
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| Q |
366 |
tagcatatgcatgttttttaaggattagggataacaatattctttacacttcaact |
421 |
Q |
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| T |
4075072 |
tagcatatgcatgttttttaaggattagggataacaatattctttacacttcaact |
4075127 |
T |
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