View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9872_high_12 (Length: 292)
Name: NF9872_high_12
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 282
Target Start/End: Complemental strand, 37824995 - 37824723
Alignment:
| Q |
10 |
gagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgtgttgcaagg |
109 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37824995 |
gagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaagaatttgtcatcctctttggtttctcttagtctacgaaacactgtgttgcaagg |
37824896 |
T |
|
| Q |
110 |
aaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaactggagc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37824895 |
aaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcataaccttagtggtcaacttccaaagtccaactggagc |
37824796 |
T |
|
| Q |
210 |
acttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
282 |
Q |
| |
|
||| |||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37824795 |
actcctctaaggtacttggacctctcttcctctgctttttcaggtgaaattccttattccataggtcaattga |
37824723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 37640981 - 37640700
Alignment:
| Q |
1 |
atttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgt |
100 |
Q |
| |
|
||||| |||| ||| |||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
37640981 |
atttgaatagtgtggatatgtcttccattacggagagctctttgtcaatgctaaagaatttgtcatcctctttggtttctcttagtctacgaaaaactga |
37640882 |
T |
|
| Q |
101 |
gttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtcc |
200 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
37640881 |
gttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtcc |
37640782 |
T |
|
| Q |
201 |
aactggagcacttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
282 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640781 |
aactggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
37640700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 37712733 - 37712452
Alignment:
| Q |
1 |
atttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgt |
100 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
37712733 |
atttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaaagaatttgtcatcctctttggtttctcttagtctacgagacactgt |
37712634 |
T |
|
| Q |
101 |
gttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
37712633 |
gttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtcc |
37712534 |
T |
|
| Q |
201 |
aactggagcacttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
282 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37712533 |
aactggagcactcctctaaggtacttggtcctctcttcctctgctttttcaggtgaaattccttattccataggtcaattga |
37712452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 282
Target Start/End: Complemental strand, 37697887 - 37697615
Alignment:
| Q |
10 |
gagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgtgttgcaagg |
109 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37697887 |
gagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaagaatttgtcatcctctttggtttctcttagtctacgaaacactgtgttgcaagg |
37697788 |
T |
|
| Q |
110 |
aaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaactggagc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697787 |
aaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagc |
37697688 |
T |
|
| Q |
210 |
acttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
282 |
Q |
| |
|
||| ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697687 |
actcctctaaggtacttagacctctcttacactgctttctcaggtgaaattccttattccataggtcaattga |
37697615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 37534209 - 37533928
Alignment:
| Q |
1 |
atttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgt |
100 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | |||| |
|
|
| T |
37534209 |
atttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaaagaatttgtcatcctctttggtttctcttagtctatcagaaactga |
37534110 |
T |
|
| Q |
101 |
gttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtcc |
200 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37534109 |
gttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaatgataaccttagtggtcaacttccaaagtcc |
37534010 |
T |
|
| Q |
201 |
aactggagcacttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
282 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37534009 |
aactggagcactcctctaaggtacttggtcctctctttctctgctttttcaggtgaaattccttattccataggtcaattga |
37533928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 37595433 - 37595152
Alignment:
| Q |
1 |
atttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgt |
100 |
Q |
| |
|
||||| |||| ||| |||||||||| || | ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
37595433 |
atttgaatagtgtggatatgtcttccattacggagagctctttgtccatgctaaagaatttttcatcctctttggtttctcttcttctacgaaacactgg |
37595334 |
T |
|
| Q |
101 |
gttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtcc |
200 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595333 |
gttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtcc |
37595234 |
T |
|
| Q |
201 |
aactggagcacttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
282 |
Q |
| |
|
|||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37595233 |
aacttgagcactcctctaaggtacttgaacctccgtttatctgctttttcaggtgaaattccttattccataggtcaattga |
37595152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 282
Target Start/End: Complemental strand, 37436807 - 37436535
Alignment:
| Q |
10 |
gagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgtgttgcaagg |
109 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| | || ||| |||||||||||| ||||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
37436807 |
gagtgaaaatgtcttcaattggagagagctctttgtcgttgttaacgaatttgtcatcttctttggtttctcttagtctagcatccactcagttgcaagg |
37436708 |
T |
|
| Q |
110 |
aaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaactggagc |
209 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37436707 |
aaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagc |
37436608 |
T |
|
| Q |
210 |
acttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
282 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37436607 |
actcctctaaggtacttgaacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
37436535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 37399874 - 37400144
Alignment:
| Q |
12 |
gtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgtgttgcaaggaa |
111 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | |||| ||||||||||| |
|
|
| T |
37399874 |
gtgaacatgtcttccctcagagagagctctttgtcaatgctaaagaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaa |
37399973 |
T |
|
| Q |
112 |
atatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaactggagcac |
211 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37399974 |
atttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcac |
37400073 |
T |
|
| Q |
212 |
ttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
282 |
Q |
| |
|
| |||||||||||||| |||| || |||||||| |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
37400074 |
tcctctaaggtacttggtcctctcttcctctgctttttcaggtgaaattccctattccataggccaattga |
37400144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 37703777 - 37703496
Alignment:
| Q |
1 |
atttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgt |
100 |
Q |
| |
|
||||| |||| ||| |||||||||| || | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || | |||| |
|
|
| T |
37703777 |
atttgaatagtgtggatatgtcttccattacggagagctcattgtcaatgctaaagaatttgtcatcctctttggtttctcttagtctatcagaaactga |
37703678 |
T |
|
| Q |
101 |
gttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtcc |
200 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |
|
|
| T |
37703677 |
gttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcattcaattataaccttagtggtcaacttccaaaatcc |
37703578 |
T |
|
| Q |
201 |
aactggagcacttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
282 |
Q |
| |
|
||||||||| || ||||||| |||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37703577 |
aactggagctctcctctaagatacttgaacctctcttcctctgctttttcaggtgaaattccttattccataggtcaattga |
37703496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 37392012 - 37392240
Alignment:
| Q |
1 |
atttggatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgt |
100 |
Q |
| |
|
||||| |||||||| |||||| ||| || |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| | | | || |
|
|
| T |
37392012 |
atttgaatagagtggatatgtattccattagagagagctctttgtctatgctaaagaatgtgtcatcctctttggtttctcttaggctaggagaaattgg |
37392111 |
T |
|
| Q |
101 |
gttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtcc |
200 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||||||||||||||||||||| | ||||||||| ||| || | ||||| ||| |||||||||| || |
|
|
| T |
37392112 |
gttgcaaggaaatttgtcaagtgccatcctctctttacctaatcttcaaagactagatttgtca---aataatgaacttagcggtaaacttccaaaatca |
37392208 |
T |
|
| Q |
201 |
aactggagcacttctctaaggtacttgtacct |
232 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |
|
|
| T |
37392209 |
aactggagcactcctctaaggtacttggacct |
37392240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 37381397 - 37381659
Alignment:
| Q |
12 |
gtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgtgttgcaaggaa |
111 |
Q |
| |
|
||||| ||||| || || |||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||| | | |||| ||||||||||| |
|
|
| T |
37381397 |
gtgaacatgtcctctattagagcgagctctttatctatgctaaagaatttgtcatcctctttggtttctcttggtctaggagaaactgggttgcaaggaa |
37381496 |
T |
|
| Q |
112 |
atatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaactggagcac |
211 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||| |||| | | ||||| |||| |||| | | || || |||||||||| || |||||||||||||| |
|
|
| T |
37381497 |
atttgtcaagtgacatcctctctttacctaatctccaaacactagatttatcatctaataaatatctgagcagtcaacttccgaaatccaactggagcac |
37381596 |
T |
|
| Q |
212 |
ttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccatagg |
274 |
Q |
| |
|
| || | ||||||||| ||||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
37381597 |
tcctttgaggtacttggacctctctcgcacccctttctcaggtgaaattccttattccatagg |
37381659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 37429839 - 37429618
Alignment:
| Q |
16 |
atatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgtgttgcaaggaaatat |
115 |
Q |
| |
|
|||| |||| |||||||||||| ||||||| | |||||| |||||| || ||||||||||| ||||| |||| ||| ||||| ||||||| |||| | |
|
|
| T |
37429839 |
atatatctttaatcagagagagatctttgtcgctgctaaggaatttatcgtcctctttggtcgctcttgatctatcaatcactggcttgcaagaaaattt |
37429740 |
T |
|
| Q |
116 |
atcaag----tgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaactggagcac |
211 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| | | |||||||| |||||||| |||||||||| |||||||| ||||||||||||||| |
|
|
| T |
37429739 |
tccaagctagtgacatcctctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcac |
37429640 |
T |
|
| Q |
212 |
ttctctaaggtacttgtacctc |
233 |
Q |
| |
|
| | |||||||||||| ||||| |
|
|
| T |
37429639 |
tcccctaaggtacttggacctc |
37429618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 37412380 - 37412504
Alignment:
| Q |
16 |
atatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgtgttgcaaggaaatat |
115 |
Q |
| |
|
|||||||||| |||||||||| ||||||| | ||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||| | |
|
|
| T |
37412380 |
atatgtcttccatcagagagaattctttgtcgctgctaaagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaattt |
37412479 |
T |
|
| Q |
116 |
atcaagtgacatcctctctttacct |
140 |
Q |
| |
|
| |||||||||| | |||||||||| |
|
|
| T |
37412480 |
agcaagtgacattccctctttacct |
37412504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 37412513 - 37412608
Alignment:
| Q |
187 |
aacttccaaagtccaactggagcacttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
282 |
Q |
| |
|
||||||||| || ||||||||||||| |||||||||||||| | ||| |||| || ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37412513 |
aacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttga |
37412608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 10 - 282
Target Start/End: Complemental strand, 14554138 - 14553866
Alignment:
| Q |
10 |
gagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgtgttgcaagg |
109 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
14554138 |
gagtgaacatgtcttccatcagagagagctctttgtcaatgctaaagaatttgtcatcctctttggtttctcttagtctagcaaacaccgggttgcaagg |
14554039 |
T |
|
| Q |
110 |
aaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaactggagc |
209 |
Q |
| |
|
|||| | ||||||||||| |||||||| || |||||||||| | | |||||| | ||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
14554038 |
aaatttgtcaagtgacatactctctttgccaaatcttcaaaaactagatttggtaggtaatgatggtcttagtggtcaacttccaaaatccaactggagt |
14553939 |
T |
|
| Q |
210 |
acttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattga |
282 |
Q |
| |
|
||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14553938 |
actcctctaaggtacttgtacctccattactctgctttctcaggtgaaattccttattccataggtcaattga |
14553866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 16841936 - 16842206
Alignment:
| Q |
10 |
gagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgtgttgcaagg |
109 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
16841936 |
gagtgaacatgtcttcaattggagagagctctttgtcaatgctaaacaatttgtcatcctctttggtttctcttcatctagcaaacactggtttgcaagg |
16842035 |
T |
|
| Q |
110 |
aaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaactggagc |
209 |
Q |
| |
|
|||| | | ||||||||| |||||||| | |||||||||||| | ||||||||| |||| | |||||||||||||||||||||| |||||||||||| |
|
|
| T |
16842036 |
aaatttgttaagtgacatactctctttgtcaaatcttcaaagactagatttgtcacataatcaagaccttagtggtcaacttccaaaatccaactggagc |
16842135 |
T |
|
| Q |
210 |
acttctctaaggtacttgtacctccgtttatctgctttctcaggtgaaattccttattccataggtcaatt |
280 |
Q |
| |
|
||| |||||||||||||||||||| | ||||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
16842136 |
actcctctaaggtacttgtacctctctcatactgctttctcaggagaaatctcctattccataggtcaatt |
16842206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 24216817 - 24217050
Alignment:
| Q |
21 |
tcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttctcttagtctaccaaacactgtgttgcaaggaaatatatcaa |
120 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||| |
|
|
| T |
24216817 |
tcttcaatcagagagagctctttg------ctaaagaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaa |
24216910 |
T |
|
| Q |
121 |
gtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaactggagcacttctctaag |
220 |
Q |
| |
|
||||||||||||||||||| |||||||||| | | |||||||||| ||| | ||||| ||||| || |||||| |||||||||||||||| | ||||| |
|
|
| T |
24216911 |
gtgacatcctctctttaccaaatcttcaaaaactagatttgtcatcgaatcaagaccttcgtggtaaatttccaacgtccaactggagcactcccctaag |
24217010 |
T |
|
| Q |
221 |
gtacttgtacctccgtttatctgctttctcaggtgaaatt |
260 |
Q |
| |
|
||||||| ||||| ||| |||| |||||||||||||||| |
|
|
| T |
24217011 |
gtacttggacctctctttctctggtttctcaggtgaaatt |
24217050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University