View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9872_high_16 (Length: 239)
Name: NF9872_high_16
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 28630198 - 28630398
Alignment:
| Q |
21 |
tacattaaaattatgaaaagagacaactacaacaaaaagaaaacataacaatttagttcttgttcttcatcatactccgcaggtaccagctccaaagttg |
120 |
Q |
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| T |
28630198 |
tacattaaaattatgaaaaga--caactacaacaaaaagaaatcataacaatttagttcttgttcttcatcagactccgcaggtaccagctccaaagttg |
28630295 |
T |
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| Q |
121 |
atcaattttcccattcatatggtcagattttgatataaaaaacatcacacctttgtcctatttctagatgcatatttgatgaaagaaacacccatcaaaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28630296 |
atcaattttcccattcatatggtcagattttgatataaaaaacatcacacctttgtcctatttctagatgcatatttgatgaaagaaacacccatcaaaa |
28630395 |
T |
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| Q |
221 |
tat |
223 |
Q |
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||| |
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| T |
28630396 |
tat |
28630398 |
T |
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