View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9872_low_1 (Length: 447)
Name: NF9872_low_1
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 9610297 - 9610713
Alignment:
| Q |
18 |
cttaggtcttgaacattgtcacacatcatcacctaagaagttgtcacattcttttctaagttccctttttctaaaccacccttttccaagtccaaattct |
117 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9610297 |
cttaagtcttgaacattgttacacatcatcacctaagaagttgtcacattcttttctaagttccctttttctaaaccacccttttccaagtccaaattct |
9610396 |
T |
|
| Q |
118 |
ctaagcttacaagcttaggaagatctactttgtttggttcttcaataacagcttttcttttccaatatttgcagtggagaaccagctggaggattcctaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9610397 |
ctaagcttacaagcttaggaagatctactttgtttggttcttcaataacaacttttcttttccaatatttgcagtggagaaccagctggaggattcctaa |
9610496 |
T |
|
| Q |
218 |
gggagttccaatcacacttggtccctattaaaaccaacaacatcaatgtcaataagattctcttatgttattaataattttaattatcaaataaattatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9610497 |
gggagttccaatcacacttggtccctattaaaaccaacaacatcaatgtcaataagattatcttatgttattaataattttaattatcaaataaattatc |
9610596 |
T |
|
| Q |
318 |
cgaaaatgacacaaaccgcaacgaatatatccctaatgagaagtccataagtaagccacaatacactagccaagaatgaacacaatgataatggtagtgg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9610597 |
cgaaaatgacacaaaccgcaacgaatatatccctaatgagaagtccataagtaagccacaatacactagccaagaatgaacacaatgataaaggtagtgg |
9610696 |
T |
|
| Q |
418 |
catgaattccacactct |
434 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9610697 |
catgaattccacactct |
9610713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 434
Target Start/End: Complemental strand, 41307798 - 41307692
Alignment:
| Q |
328 |
acaaaccgcaacgaatatatccctaatgagaagtccataagtaagccacaatacactagccaagaatgaacacaatgataatggtagtggcatgaattcc |
427 |
Q |
| |
|
|||||||||||| |||| ||| | || || | |||||||| | ||| ||||||||||| | || | |||||| |||||||||||||||||||||||| |
|
|
| T |
41307798 |
acaaaccgcaacaaatacatcacgaacaaggattccataagctaaccagaatacactagctgaaaaagcacacaaagataatggtagtggcatgaattcc |
41307699 |
T |
|
| Q |
428 |
acactct |
434 |
Q |
| |
|
||||||| |
|
|
| T |
41307698 |
acactct |
41307692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 434
Target Start/End: Complemental strand, 41297834 - 41297797
Alignment:
| Q |
397 |
acacaatgataatggtagtggcatgaattccacactct |
434 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
41297834 |
acacaaggataatggtagtggcatgaattcaacactct |
41297797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University