View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9872_low_11 (Length: 314)
Name: NF9872_low_11
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 24719214 - 24718930
Alignment:
| Q |
17 |
caacctcacatccccaagtggaacttctttgagaaatccaacaggtggcttagacacatcggcattcttcatttccttatacttagcagcccaatcacgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24719214 |
caacctcacatccccaagtggaacttctttgagaaatccaacaggtggcttagacacatcggcattcttcatttccctatacttagcagcccaatcacgt |
24719115 |
T |
|
| Q |
117 |
tggttttcttgtgttaagaacatctcctttggaatcatttcttgccaagccgattcatcggatggtgtcacatgaacatgagactgatacatcatcactt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24719114 |
tggttttcttgtgttaagaacatctcctttggaatcatttcttgccaagccgattcatcggatggtgtcacatgaacatgagactgatacatcatcactt |
24719015 |
T |
|
| Q |
217 |
ctttcttccatgtctcattctttgatgccattaattcagttcgcaacgtatgcgattgaggcaaattatttatgcattctctgct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24719014 |
ctttcttccatgtctcattctttgatgccattaattcagttcgcaacgtatgcgattgaggcaaattatttatgcattctttgct |
24718930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 24728399 - 24728294
Alignment:
| Q |
21 |
ctcacatccccaagtggaacttctttgagaaatccaacaggtggcttagacacatcggcattcttcatttccttatacttagcagcccaatcacgttggt |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
24728399 |
ctcacatccccaagaggaacttctttgagaaatccaactggtggcttagacagatcggcattcttcatttccctatacttagcagcccagtcacgttggt |
24728300 |
T |
|
| Q |
121 |
tttctt |
126 |
Q |
| |
|
|||||| |
|
|
| T |
24728299 |
tttctt |
24728294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 24688896 - 24688681
Alignment:
| Q |
17 |
caacctcacatccccaagtggaacttctttgagaaatccaacaggtggcttagacacatcggcattcttcatttccttatacttagcagcccaatcacgt |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| || ||||||||| ||||| | |||||| |||| | ||||| | |||||||||| || |
|
|
| T |
24688896 |
caacctcacatccccaagtggcacttctttcagaaatcccactggtggcttaaacacacccaaattcttgattttcctatacattaaagcccaatcatgt |
24688797 |
T |
|
| Q |
117 |
tggttttcttgtgttaagaacatctcctttggaatcatttcttgccaagccgattcatcggatggtgtcacatgaacatgagactgatacatcatcactt |
216 |
Q |
| |
|
|||||||||| || |||| |||| | |||||| || | |||||| |||||||| | ||||||||||||| |||||| |||||||| |
|
|
| T |
24688796 |
tggttttcttctgataag---atcttccttggaagcaaagttgcccaagcagattcatcagttggtgtcacatgataatgaga---------catcactt |
24688709 |
T |
|
| Q |
217 |
ctttcttccatgtctcattctttgatgc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
24688708 |
ctttcttccatgtctcattctttgatgc |
24688681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 24728223 - 24728187
Alignment:
| Q |
209 |
catcacttctttcttccatgtctcattctttgatgcc |
245 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24728223 |
catcacttctttcttccatgtttcattctttgatgcc |
24728187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University