View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9872_low_12 (Length: 311)

Name: NF9872_low_12
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9872_low_12
NF9872_low_12
[»] chr4 (11 HSPs)
chr4 (21-203)||(8819605-8819787)
chr4 (15-91)||(51356936-51357012)
chr4 (20-91)||(41039087-41039158)
chr4 (20-91)||(22278064-22278135)
chr4 (21-91)||(23626609-23626679)
chr4 (24-90)||(24916605-24916671)
chr4 (21-91)||(38951375-38951445)
chr4 (21-91)||(40715150-40715220)
chr4 (20-91)||(36465116-36465187)
chr4 (21-86)||(40572196-40572261)
chr4 (20-74)||(19841513-19841567)
[»] chr8 (7 HSPs)
chr8 (15-91)||(31005770-31005846)
chr8 (20-89)||(7987529-7987598)
chr8 (20-91)||(8227531-8227602)
chr8 (20-73)||(7968737-7968790)
chr8 (20-91)||(36583192-36583263)
chr8 (21-91)||(6870791-6870861)
chr8 (21-91)||(11481187-11481257)
[»] scaffold0691 (1 HSPs)
scaffold0691 (20-91)||(7671-7742)
[»] chr3 (9 HSPs)
chr3 (20-91)||(4127754-4127825)
chr3 (20-91)||(12148786-12148857)
chr3 (20-91)||(21287869-21287940)
chr3 (20-91)||(13825662-13825733)
chr3 (21-91)||(27926927-27926997)
chr3 (19-86)||(5294979-5295046)
chr3 (20-91)||(25875010-25875081)
chr3 (21-91)||(48251951-48252021)
chr3 (21-85)||(36584156-36584220)
[»] chr1 (11 HSPs)
chr1 (20-91)||(47140542-47140613)
chr1 (17-91)||(25294224-25294298)
chr1 (20-91)||(48379393-48379464)
chr1 (20-91)||(29678621-29678692)
chr1 (20-91)||(31585533-31585604)
chr1 (21-91)||(19884710-19884780)
chr1 (19-91)||(2192088-2192160)
chr1 (20-91)||(17563086-17563157)
chr1 (21-70)||(36729055-36729104)
chr1 (38-90)||(15378687-15378739)
chr1 (15-91)||(38264619-38264695)
[»] chr5 (8 HSPs)
chr5 (17-90)||(35188896-35188969)
chr5 (20-91)||(39207401-39207472)
chr5 (20-91)||(39800707-39800778)
chr5 (21-91)||(40056737-40056807)
chr5 (21-79)||(42836748-42836806)
chr5 (20-91)||(23428988-23429059)
chr5 (20-91)||(3925967-3926036)
chr5 (20-91)||(26621227-26621298)
[»] scaffold0115 (1 HSPs)
scaffold0115 (20-91)||(21818-21889)
[»] chr6 (9 HSPs)
chr6 (20-91)||(32292684-32292755)
chr6 (20-79)||(5999308-5999367)
chr6 (20-91)||(8576504-8576575)
chr6 (17-91)||(7622118-7622192)
chr6 (19-91)||(34435101-34435173)
chr6 (20-90)||(28581903-28581973)
chr6 (20-89)||(10788326-10788397)
chr6 (20-91)||(35168015-35168086)
chr6 (20-80)||(10409237-10409297)
[»] chr7 (15 HSPs)
chr7 (21-91)||(11039491-11039561)
chr7 (20-92)||(23809981-23810053)
chr7 (15-91)||(33189147-33189223)
chr7 (15-89)||(1053378-1053453)
chr7 (20-91)||(5972734-5972805)
chr7 (20-91)||(27336696-27336767)
chr7 (21-91)||(7766814-7766884)
chr7 (21-91)||(38440745-38440815)
chr7 (21-91)||(25501897-25501967)
chr7 (17-90)||(2944369-2944442)
chr7 (20-91)||(22519494-22519565)
chr7 (20-75)||(30541784-30541839)
chr7 (15-86)||(36298538-36298609)
chr7 (20-91)||(47924743-47924814)
chr7 (24-56)||(14754362-14754394)
[»] chr2 (6 HSPs)
chr2 (17-90)||(45151522-45151595)
chr2 (21-91)||(5938489-5938559)
chr2 (20-91)||(42625318-42625388)
chr2 (20-91)||(13807326-13807397)
chr2 (20-85)||(13626600-13626665)
chr2 (21-85)||(31604592-31604656)
[»] scaffold0155 (1 HSPs)
scaffold0155 (21-89)||(7181-7248)
[»] scaffold0057 (1 HSPs)
scaffold0057 (18-91)||(66351-66424)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 8819605 - 8819787
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatccgataacatataagatatggtgatataaaa 120  Q
    ||||||||||| |||||||||| |||| || |||| |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  8819605 atttcatatttgtccaacggagtggacgcgaatatcacactatccgcatccatggatatccatttacatctgataacatataagatatggtgatataaaa 8819704  T
Q  121 tcacttggttgagaatgtttctagctgtatggttccgtcttcttcggaatattatcgatgatggagtatcttgttctcatgga 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8819705 tcacttggttgagaatgtttctagctgtatggttccgtcttcttcggaatattatcgatgatggagtatcttgttctcatgga 8819787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 51357012 - 51356936
Alignment:
Q  15 gcacagatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||    
T  51357012 gcacaaatttcatatttgtccaacggagcggacacagatatcacactatccgcatccatggatatccatttacatcc 51356936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 41039158 - 41039087
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||    
T  41039158 gatttcatatttatctaacggagcggacacggatatcacattatccgcatccatggatatccatttacatcc 41039087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 22278135 - 22278064
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||||||||||| ||||||||||||| | | ||||| |||||||||||||| ||||||||||    
T  22278135 gatttcatatttatccaacggaacggacacggatatcataatatctacatccatggatatccatttacatcc 22278064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 23626679 - 23626609
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| |||||||||||||  |||| ||||||| |||||||||||||||| ||||||||||    
T  23626679 atttcatatttatccgacggagcggacacaaatatcacactatttgcatccatggatatccatttacatcc 23626609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 24916671 - 24916605
Alignment:
Q  24 tcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatc 90  Q
    |||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||| |||| ||||    
T  24916671 tcatatttatccaacgaagcggacacggatatcatactatctgcgtccatggatatccatttgcatc 24916605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 38951445 - 38951375
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||| ||||||||| |||||| |||||||| |||| ||||| || ||||||||||||||| ||||||||||    
T  38951445 attttatatttatctaacggaacggacacgaatatcacactctccgcatccatggatatccatttacatcc 38951375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 40715150 - 40715220
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||| |||| ||||||| | |||||| |||| ||||||||||||||| |||||||| ||||||||||    
T  40715150 atttcatacttattcaacggatcagacacgaatatcacactatctgcatccttggatatccatttacatcc 40715220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 36465116 - 36465187
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||| |||||||||||||| ||  |||| |||||||| |||||| | |||||| ||||||||||    
T  36465116 gatttcatatttgtccaacggagcggatacaaatatcacactatccgcatccgtagatatccatttacatcc 36465187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 40572196 - 40572261
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgattta 86  Q
    |||||| ||||||| ||||||| ||||||| |||| ||||||||  |||||||||||||| |||||    
T  40572196 atttcacatttatctaacggagtggacacgaatatcacactatccacatccatggatatccattta 40572261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 19841567 - 19841513
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatg 74  Q
    |||||||||||||||| || |||||||||  ||||| |||||||| |||||||||    
T  19841567 gatttcatatttatccgacagagcggacatagatatcacactatccgcatccatg 19841513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 31005846 - 31005770
Alignment:
Q  15 gcacagatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  31005846 gcacggatttcatatttgtccaacggagcggacacggatatcacactatctgcatccatggatatacatttacatcc 31005770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 7987529 - 7987598
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacat 89  Q
    |||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||    
T  7987529 gatttcatatttatccaacggagcggacacagatatcacaatatctgcatccatggatatccatttacat 7987598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 8227531 - 8227602
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||    
T  8227531 gatttcatatttatctaacggagcggacacggatatcacactatccacatccatggatatccatttacatcc 8227602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 7968737 - 7968790
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccat 73  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7968737 gatttcatatttatccaacggagcggacacggatatcacactatctgcatccat 7968790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 36583192 - 36583263
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| |||||| ||||||||||||| | |||||  ||||||||||||||| ||||||||||    
T  36583192 gatttcatatttatctaacggaacggacacggatatcatactatacgcatccatggatatccatttacatcc 36583263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 6870791 - 6870861
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||||||  ||| ||||||||||| ||| |||| ||||||||||||||  ||||||||||    
T  6870791 atttcatatttatccaacatagcagacacggatattacattatccgcatccatggatatatatttacatcc 6870861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 11481257 - 11481187
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||| |  |||||||||||  |||| |||||||| ||||| ||||||||| ||||||||||    
T  11481257 atttcatatttatctattggagcggacacaaatatcacactatccgcatctatggatatccatttacatcc 11481187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 7742 - 7671
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||    
T  7742 gatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatatcgatttacatcc 7671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 4127825 - 4127754
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  4127825 gatttcatatttatccaacggaacggacacggatatcacactatccgcatccatggatatccatttacatcc 4127754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 12148857 - 12148786
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||    
T  12148857 gatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatatcgatttacatcc 12148786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 21287940 - 21287869
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| ||||||| |||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  21287940 gatttcatatttatctaacggaggggacacagatatcacactatctgcatccatggatatccatttacatcc 21287869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 13825733 - 13825662
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| ||||||||||||||  |||| |||||||| ||||||||||||||| ||||||||||    
T  13825733 gatttcatatttatctaacggagcggacacatatatcacactatccgcatccatggatatccatttacatcc 13825662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 27926927 - 27926997
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  27926927 atttcatatttatctaacggagcggacacggatatgacactatctacatccatgaatatccatttatatcc 27926997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 5295046 - 5294979
Alignment:
Q  19 agatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgattta 86  Q
    |||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||| ||||| |||||    
T  5295046 agatttcatatttatctaacggaggggacacggatatcacactatccgcatccatgaatatccattta 5294979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 25875010 - 25875081
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||| |||||| |||||||||||||||||||| ||||||||  |||||||| ||||| ||||||||||    
T  25875010 gatttcatctttatctaacggagcggacacggatatcacactatccacatccatgtatatccatttacatcc 25875081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 48251951 - 48252021
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||||||||| |||| | |||||| ||||||||  ||| |||||||||| ||||||||||    
T  48251951 atttcatatttatccaacggaacggatatggatatcacactatccacattcatggatatccatttacatcc 48252021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 36584220 - 36584156
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgattt 85  Q
    ||||||||||||||||| ||||| || || ||||| | |||||||||||||||||||||| ||||    
T  36584220 atttcatatttatccaatggagcagatacagatatcatactatctgcatccatggatatccattt 36584156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 47140613 - 47140542
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| ||||||||||    
T  47140613 gatttcatatttatccaacggagcggacacgaatatcacactatccgcatccatggatatctatttacatcc 47140542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 25294224 - 25294298
Alignment:
Q  17 acagatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  25294224 acagatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatatccatttacatcc 25294298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 48379393 - 48379464
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||| ||||||||||    
T  48379393 gatttcatatttatctaacggagcggacacggatttcacactatccgcatccatggatatccatttacatcc 48379464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 29678621 - 29678692
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||||||||||||||||||  |||| | |||||||||||| ||||||||| ||||||||||    
T  29678621 gatttcatatttatccaacggagcggacacatatatcatactatctgcatcaatggatatccatttacatcc 29678692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 31585533 - 31585604
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||| ||||||||| ||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||    
T  31585533 gattttatatttatctaacggagcggacaaggatattacactatccgcatccatggatatccatttacatcc 31585604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 19884710 - 19884780
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||| ||||| ||||||||||    
T  19884710 atttcatatttgtccaacggagcggacacagatatcacactatccgcatccatgaatatccatttacatcc 19884780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 2192088 - 2192160
Alignment:
Q  19 agatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||| || || ||||||||||||||||| ||| |||| ||||||||||| ||| ||||||||||    
T  2192088 agatttcatatttgtctaatggagcggacacggatatcacattatccgcatccatggacatccatttacatcc 2192160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 17563086 - 17563157
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||| ||||||||| ||| |||||||||  ||||| |||||||| ||||||||||||||| ||||||||||    
T  17563086 gattttatatttatctaacagagcggacaaagatattacactatccgcatccatggatatccatttacatcc 17563157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 36729055 - 36729104
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatc 70  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  36729055 atttcatatttatccaacggatcggacacggatatcacactatccgcatc 36729104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 15378739 - 15378687
Alignment:
Q  38 cggagcggacacggatataacactatctgcatccatggatatcgatttacatc 90  Q
    |||||| ||||||||||| |||||||| ||||||| ||||||| |||||||||    
T  15378739 cggagcagacacggatatcacactatccgcatccacggatatccatttacatc 15378687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 38264619 - 38264695
Alignment:
Q  15 gcacagatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||| |||||||||||| || |||||| |||||||  |||| ||| |||| | ||||||| ||||| ||||||||||    
T  38264619 gcacggatttcatatttgtctaacggaacggacacatatatcacagtatccgtatccatgaatatccatttacatcc 38264695  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 35188896 - 35188969
Alignment:
Q  17 acagatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatc 90  Q
    |||||||||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||| |||||||||    
T  35188896 acagatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatatccatttacatc 35188969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 39207401 - 39207472
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  39207401 gatttcatatttatctaacggagcagacacggatatcacactatccgcatccatggatatccatttacatcc 39207472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 39800707 - 39800778
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||| ||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  39800707 gattttatatttatctaacggagtggacacggatatcacactatccgcatccatggatatccatttacatcc 39800778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 40056807 - 40056737
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||| ||||||| ||| |||||||| |||||||| ||||||||||||||| ||||||||||    
T  40056807 atttcatatttatctaacggagtggaaacggatatcacactatccgcatccatggatatccatttacatcc 40056737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 42836806 - 42836748
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatat 79  Q
    |||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||    
T  42836806 atttcatatttatctaacggagcggacacagatatcacactatccgcatccatggatat 42836748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 23429059 - 23428988
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| | |||||| |||| |||||| |||||||| ||||||||| ||||| ||||||||||    
T  23429059 gatttcatatttatctatcggagcagacaaggatatcacactatccgcatccatgaatatctatttacatcc 23428988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 3926036 - 3925967
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| ||||||||||||||  |||| ||||||||  |||||||||||||  ||||||||||    
T  3926036 gatttcatatttatctaacggagcggacacaaatatcacactatccacatccatggatat--atttacatcc 3925967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 26621298 - 26621227
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||  | ||||| |||||||||||| ||||||||||||| ||  |||||  ||||||||||    
T  26621298 gatttcatatttatttagcggagtggacacggatatcacactatctgcattcaaagatattcatttacatcc 26621227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 21889 - 21818
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  21889 gatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatatccatttacatcc 21818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 32292684 - 32292755
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||||| ||||||||||    
T  32292684 gatttcatatttatccaacggagcggacacggatatcatactatccgcatccatcgatatccatttacatcc 32292755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 5999367 - 5999308
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatat 79  Q
    ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  5999367 gatttcatatttatctaacggagcggacacggatatcacactatccgcatccatggatat 5999308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 8576575 - 8576504
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||  |||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  8576575 gatttcatatttatttaacggaacggacacggatatcacactatccgcatccatggatatccatttacatcc 8576504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 7622192 - 7622118
Alignment:
Q  17 acagatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||  |||||||| ||||||||||    
T  7622192 acagatttcatatttattcaacggaacggacacagatatcacactatctgcatctgtggatatccatttacatcc 7622118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 34435101 - 34435173
Alignment:
Q  19 agatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||||| || |||||||| |||||||| |||||||| ||||||||| ||||| ||||||||||    
T  34435101 agatttcatatttatctaatggagcggatacggatatcacactatccgcatccatgaatatccatttacatcc 34435173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 28581973 - 28581903
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatc 90  Q
    ||||||||||||||| |||||||| |||| |||||| ||||||||  |||||||||||||| |||||||||    
T  28581973 gatttcatatttatctaacggagcagacatggatatcacactatccacatccatggatatccatttacatc 28581903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 10788397 - 10788326
Alignment:
Q  20 gatttcatatttatccaacggagcgg--acacggatataacactatctgcatccatggatatcgatttacat 89  Q
    |||||||| |||||| ||||||||||  |||||||||| |||||||| |||| |||| ||||| ||||||||    
T  10788397 gatttcatgtttatctaacggagcggacacacggatatcacactatccgcatacatgaatatccatttacat 10788326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 35168015 - 35168086
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||| ||||||||| || |||| ||| |||||||| | |||||  ||||||||||||||| ||||||||||    
T  35168015 gattttatatttatctaatggagtggatacggatatcatactattcgcatccatggatatccatttacatcc 35168086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 10409237 - 10409297
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatc 80  Q
    ||||| ||||||||||||||||||| ||||  |||| ||||||||  |||||||| |||||    
T  10409237 gattttatatttatccaacggagcgaacacatatatcacactatcatcatccatgaatatc 10409297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 11039491 - 11039561
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||| ||||||||||    
T  11039491 atttcatatttatccaacggagtggacacggatatcatattatctgcatccatggatatctatttacatcc 11039561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 23809981 - 23810053
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatccg 92  Q
    ||||||||||||||| ||||||| ||||||||||||  ||||||| ||||||||||||||| |||||||||||    
T  23809981 gatttcatatttatctaacggagtggacacggatatcgcactatccgcatccatggatatccatttacatccg 23810053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 33189223 - 33189147
Alignment:
Q  15 gcacagatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||| |||||||||||||| ||||||| |||||||||||| | ||||||||||||||| |||||| ||||||||||    
T  33189223 gcacatatttcatatttatcaaacggagtggacacggatatcaaactatctgcatccatagatatccatttacatcc 33189147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 1053378 - 1053453
Alignment:
Q  15 gcacagatttcatatttatccaacggagcggacacggatataacactatctgcatccatgga-tatcgatttacat 89  Q
    ||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||||| |||| ||||||||    
T  1053378 gcacagatttcatatttgtctaatggagcggacacggatatcacactatctgcatccatggattatccatttacat 1053453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 5972805 - 5972734
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||| |||| |||||||||| ||||||||||    
T  5972805 gatttcatatttatctaacggagcagacacggatatcacactatccgcattcatggatatccatttacatcc 5972734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 27336767 - 27336696
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| |||| || |||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  27336767 gatttcatatttatctaacgaagtggacacggatatcacactatctgcatccatggacatccatttacatcc 27336696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 7766884 - 7766814
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||||||||||||||||| | |||| |||||||| ||||||||| ||||| ||||||||||    
T  7766884 atttcatatttatccaacggagcggacatgaatatcacactatccgcatccatgtatatccatttacatcc 7766814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 38440745 - 38440815
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||  ||||||||||    
T  38440745 atttcatatttatccaacgaagcggacacgaatatcacactatccgcatccatggatattcatttacatcc 38440815  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 25501967 - 25501897
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||| ||||||||| ||| |||||| ||||| ||  ||| |||||||||| ||||||||||    
T  25501967 atttcatatttatctaacggagcgaacatggatatcacactttcaacattcatggatatccatttacatcc 25501897  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 2944369 - 2944442
Alignment:
Q  17 acagatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatc 90  Q
    |||| ||||||| |||| |||| |||||||||||||||| |||| |||  ||||||||||| || |||||||||    
T  2944369 acagttttcatacttatacaacagagcggacacggatatcacaccatccacatccatggatgtccatttacatc 2944442  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 22519494 - 22519565
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||| ||||||||| |||| ||||   |||| |||||||| | ||||||||||||| ||||||||||    
T  22519494 gatttcataattatccaaccgagcagacaaaaatattacactatccgtatccatggatatccatttacatcc 22519565  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 30541784 - 30541839
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatgg 75  Q
    ||||||||||| ||||||||||||||| ||| |||| | |||||| ||||||||||    
T  30541784 gatttcatattaatccaacggagcggatacgaatatcatactatccgcatccatgg 30541839  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 36298609 - 36298538
Alignment:
Q  15 gcacagatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgattta 86  Q
    ||||| |||||||||||  ||||||||| | |||||||| | |||||||  ||||||||||||||| |||||    
T  36298609 gcacaaatttcatatttgcccaacggagtgaacacggatgtgacactattcgcatccatggatatccattta 36298538  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 47924814 - 47924743
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||||||| | | |||||||| |||| | ||||||| |||||||| ||||| ||||| ||||    
T  47924814 gatttcatatttatccaatgaaacggacacgtatattagactatctacatccatgaatatccatttatatcc 47924743  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 14754362 - 14754394
Alignment:
Q  24 tcatatttatccaacggagcggacacggatata 56  Q
    ||||||||||||||||| |||||||||||||||    
T  14754362 tcatatttatccaacggtgcggacacggatata 14754394  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 45151522 - 45151595
Alignment:
Q  17 acagatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatc 90  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||| |||| |||||||||| |||||||||    
T  45151522 acagatttcatatttatctaacagagcggacacggatatcacactatccgcatgcatggatatccatttacatc 45151595  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 5938559 - 5938489
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||| ||||||| |||||||||||| |||||||   |||||||||||||| ||||||||||    
T  5938559 atttcatatttatctaacggagtggacacggatatcacactattcacatccatggatatccatttacatcc 5938489  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 42625318 - 42625388
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    ||||||||||||||| |||| || |||||||||||| ||||| || ||||||||||||||| ||||||||||    
T  42625318 gatttcatatttatctaacg-agtggacacggatatcacactctccgcatccatggatatccatttacatcc 42625388  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 13807397 - 13807326
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||| || ||||  |||||||| ||||| |||||||| || |||||||||||| ||||||||||    
T  13807397 gatttcatatttttctaacgaggcggacacagatatcacactatccgcgtccatggatatccatttacatcc 13807326  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 13626600 - 13626665
Alignment:
Q  20 gatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgattt 85  Q
    ||||||||||||||| |||| | |||||||| |||| |||||||| ||||| ||||||||| ||||    
T  13626600 gatttcatatttatctaacgaaacggacacgaatatcacactatccgcatctatggatatccattt 13626665  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 31604656 - 31604592
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgattt 85  Q
    ||||||||||||||||||||||| |||||  |||| |||||||| |  |||||| ||||| ||||    
T  31604656 atttcatatttatccaacggagcagacacaaatatcacactatccgtgtccatgaatatccattt 31604592  T

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Target: scaffold0155 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 7181 - 7248
Alignment:
Q  21 atttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacat 89  Q
    |||||||||||||| |||| |||||| || ||||| |||||||||||||||||||||||| ||||||||    
T  7181 atttcatatttatctaacg-agcggatacagatatcacactatctgcatccatggatatccatttacat 7248  T

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Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 66424 - 66351
Alignment:
Q  18 cagatttcatatttatccaacggagcggacacggatataacactatctgcatccatggatatcgatttacatcc 91  Q
    |||||||||||||| ||||| ||||| |||||  |||| |||||||| ||||||||||| ||| ||||||||||    
T  66424 cagatttcatatttgtccaatggagctgacacaaatatcacactatccgcatccatggacatccatttacatcc 66351  T

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