View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9872_low_14 (Length: 294)
Name: NF9872_low_14
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 4999132 - 4999397
Alignment:
| Q |
15 |
gggtagaattagacatgctaatatagtgaaactgttgttttgttgtagttgtgatgatttcagaatattggtgtatgagtttatggaaaatgggagttta |
114 |
Q |
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| T |
4999132 |
gggtagaattagacatgctaatatagtgaaactgttgttttgttgtagttgtgatgatttcagaatattggtgtatgagtttatggaaaatgggagttta |
4999231 |
T |
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| Q |
115 |
ggtgatgttttgcatgaggagaagtttgtggagttggattggtctaagagatttggaattgctttaggtgctgctaaagggttggcttatttacaccatg |
214 |
Q |
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| T |
4999232 |
ggtgatgttttgcatgaggggaagtttgtggagttggattggtctaagagatttggaattgctttaggtgctgctaaagggttggcttatttacaccatg |
4999331 |
T |
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| Q |
215 |
attgtgttcctgctattgttcatagggatgtgaagagtaataatatattgcttgatcatgattttg |
280 |
Q |
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| T |
4999332 |
attgtgttcctgctattgttcatagggatgtgaagagtaataacatattgcttgatcatgattttg |
4999397 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 21468521 - 21468560
Alignment:
| Q |
197 |
tggcttatttacaccatgattgtgttcctgctattgttca |
236 |
Q |
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| T |
21468521 |
tggcttatttacaccatgattgtgctcctcctattgttca |
21468560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 38868291 - 38868357
Alignment:
| Q |
200 |
cttatttacaccatgattgtgttcctgctattgttcatagggatgtgaagagtaataatatattgct |
266 |
Q |
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| T |
38868291 |
cttatttgcaccatgattgtgttgttcctattgttcatagggatgtaaaatctagtaatatattgct |
38868357 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 26735977 - 26736025
Alignment:
| Q |
233 |
ttcatagggatgtgaagagtaataatatattgcttgatcatgattttga |
281 |
Q |
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| T |
26735977 |
ttcatagggatgttaagtctaataatatattgcttgatgctgattttga |
26736025 |
T |
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