View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9872_low_17 (Length: 286)
Name: NF9872_low_17
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 32748708 - 32748961
Alignment:
| Q |
14 |
agacctcatcaaaatgttaaatattaaccttttgatctttnnnnnnnnnnnnntacaagcattagtttatgcgtaccagatctaataatgcaccatcacc |
113 |
Q |
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| T |
32748708 |
agacctcatcaaaatgttaaatattaaccttttgatcttttaaaaaaaaa---tacaagcattagtttatgcataccagatctaataatgcaccatcacc |
32748804 |
T |
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| Q |
114 |
agccaatttttgtacctttcttcattccctacttctcttcatcaacatattcattcattcatnnnnnnnttcaaactaagccagataaattcacattcat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
32748805 |
agccaatttttgtacctttcttcattccctacttctcttcatcaacgtattcattcattcataaaaaaattcaaactaagccagataaactcacattcat |
32748904 |
T |
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| Q |
214 |
ccactaaactctccagtaacattcatgccccaacctttccaacaacaagaccataac |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32748905 |
ccactaaactctccagtaacattcatgccccaacctttccaacaacaagaccataac |
32748961 |
T |
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