View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9872_low_18 (Length: 269)
Name: NF9872_low_18
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_18 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 45274565 - 45274297
Alignment:
| Q |
1 |
tatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagaactttgctgccggtaccaagaccatgcaaaccgccaccttcggtacgtaattc |
100 |
Q |
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| T |
45274565 |
tatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagaactttgctgccggtaccaagaccatgcaaaccgccaccttcggtacgtaattc |
45274466 |
T |
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| Q |
101 |
aattattatctatcaaagcnnnnnnnattttatttgattaattgtgtaccttatgattgaagaaagagtatataagaaaaagtagcatcactctcaaaat |
200 |
Q |
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| T |
45274465 |
aattattatctatcaaagctttttttattttatttgattaattgtataccttatgattgaagaaagagtatataagaaaaagtagcatcactctcaaaat |
45274366 |
T |
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| Q |
201 |
ttatttttgaagaaaacataactcacattgaaaagagaaatatatacatataacattgacatatatagc |
269 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274365 |
ttatttttgaagaaaacataactcgcattgaaaagagaaatatatacatataacattgacatatatagc |
45274297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 45282806 - 45282540
Alignment:
| Q |
1 |
tatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagaactttgctgccggtaccaagaccatgcaaaccgccaccttcggtacgtaattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||| |
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| T |
45282806 |
tatgtatggtgatggccctgcaaggaccattgtcactggtagaaagagctttgctgctggtgtcaagaccatgcaaaccgccaccttcggtacttaattc |
45282707 |
T |
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| Q |
101 |
aattattatctatcaaagcnnnnnnnattttatttgattaattgtgtaccttatgattgaagaaagagtatataagaaaaagtagcatcactctcaaaat |
200 |
Q |
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| T |
45282706 |
aattatcatcgatcaaaactttttt-attttatttaattaattatttac-ttatgaatgaagaaagagtatatgagaaaaagtggcatcactctcaaaat |
45282609 |
T |
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| Q |
201 |
ttatttttgaagaaaacataactcacattgaaaagagaaatatatacatataacattgacatatatagc |
269 |
Q |
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| T |
45282608 |
tcatttttgaagaaaacataactaacattgaaaagatatagatacacatataacattgacatatatagc |
45282540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 45294194 - 45293958
Alignment:
| Q |
1 |
tatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagaactttgctgccggtaccaagaccatgcaaaccgccaccttcggtacgtaattc |
100 |
Q |
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|||||||||||||||||| | || ||||||||| ||||| ||||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
45294194 |
tatgtatggtgatggccccggaaagaccattgttaccggaagaaagaacggtgctgctggtgtcaagaccatgcaaaccgccaccttcggtaagtaattc |
45294095 |
T |
|
| Q |
101 |
aattattatctatcaaagcnnnnnnnattttatttgattaattgtgtaccttatgattgaagaaagagtat--ataagaaaaagtagcatcactctcaaa |
198 |
Q |
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| T |
45294094 |
aattatcatcgatcacaactttttt-attttatttaataaattgtgtaccttatgaatgaagaaagggtaatgatgagaaatagtaacatcactctcaaa |
45293996 |
T |
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| Q |
199 |
atttatttttgaagaaaacataactcacattgaaaaga |
236 |
Q |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
45293995 |
attcatttttgaagaaaacataactcacattgaaaaga |
45293958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 45303154 - 45302918
Alignment:
| Q |
1 |
tatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagaactttgctgccggtaccaagaccatgcaaaccgccaccttcggtacgtaattc |
100 |
Q |
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|||||||||||||||||| | || ||||||||| ||||| ||||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
45303154 |
tatgtatggtgatggccccggaaagaccattgttaccggaagaaagaacggtgctgctggtgtcaagaccatgcaaaccgccaccttcggtaagtaattc |
45303055 |
T |
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| Q |
101 |
aattattatctatcaaagcnnnnnnnattttatttgattaattgtgtaccttatgattgaagaaagagtat--ataagaaaaagtagcatcactctcaaa |
198 |
Q |
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| T |
45303054 |
aattatcatcgatcacaactttttt-attttatttaataaattgtgtaccttatgaatgaagaaagggtaatgatgagaaatagtaacatcactctcaaa |
45302956 |
T |
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| Q |
199 |
atttatttttgaagaaaacataactcacattgaaaaga |
236 |
Q |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
45302955 |
attcatttttgaagaaaacataactcacattgaaaaga |
45302918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 45271032 - 45270790
Alignment:
| Q |
1 |
tatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagaactttgctgccggtaccaagaccatgcaaaccgccaccttcggtacgtaattc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| || | | || |||||||| ||||||||||| |
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| T |
45271032 |
tatgtatggtgatggccctgcaaagaccattgtcactggtagaaagaaccaaatggccggtaccaacacacagaacactgccaccttttgtacgtaattc |
45270933 |
T |
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| Q |
101 |
aattattatctatcaaagcnnnnnnnattttatttgattaattgtgtaccttatgattgaagaaagagtatataagaaaaagtagcatcactctcaaaat |
200 |
Q |
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| |||| ||| |||||||| ||||||||| |||||||||||||||||||| |||||| |||||| || |||| |||||||||||||||||||| |
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| T |
45270932 |
agttat-atcgatcaaagctttt---attttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaatagtagcatcactctcaaaat |
45270837 |
T |
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| Q |
201 |
ttatttttgaagaaaaca-taactcacattgaaaagagaaatatata |
246 |
Q |
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| T |
45270836 |
tcatttttgaaaaaaacattaactcacattgaaaagatatatatata |
45270790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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