View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9872_low_20 (Length: 249)
Name: NF9872_low_20
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 3522969 - 3523129
Alignment:
| Q |
1 |
aacctcattcaaagaagcaaagattactatgtcaaaagtaggtatttctcagttgacataagagaaaggtttagaaaaatacatgaagacctcttgtctt |
100 |
Q |
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| T |
3522969 |
aacctcattcaaagaagcaaagactactatgtcaaaagtaggtatttctcagttgacataagagaaaggtttagaaaaatacatgaagacctcttgtctt |
3523068 |
T |
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| Q |
101 |
atagtcgatggaagatgaagtcatgaaccttctgatttgagaaccgaactagtttttgatg |
161 |
Q |
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| T |
3523069 |
atagtcgatgaaagatgaagtcatgaaccttctgatttgagaaccgaactagtttttgatg |
3523129 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 3524357 - 3524419
Alignment:
| Q |
175 |
gatgcaagcatgaaagaaagtcaagttagagtcaccctcgttgaaccacttcaccctccctct |
237 |
Q |
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| T |
3524357 |
gatgcaagcatgaaagaaagtcaagttagagtcaccctcgttgaaccacttcaccctccctct |
3524419 |
T |
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