View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9872_low_21 (Length: 248)
Name: NF9872_low_21
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 29950034 - 29950134
Alignment:
| Q |
130 |
gccagcacctgatcctgttttagaaatggtgaaagcttatagggcatataatcctcacatgactacatattactatgttcaaagtatggaagagaatcca |
229 |
Q |
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| T |
29950034 |
gccagcacctgatcctgttttagagatggtgaaggcttatagggcatataatccccacatgaccacatattactatgttcaaagtatggaagagaatcca |
29950133 |
T |
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| Q |
230 |
a |
230 |
Q |
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| T |
29950134 |
a |
29950134 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 10979112 - 10979050
Alignment:
| Q |
166 |
ttatagggcatataatcctcacatgactacatattactatgttcaaagtatggaagagaatcc |
228 |
Q |
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|||||| ||||||||||| | ||||| ||| ||||| |||||||||| |||||||||||||| |
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| T |
10979112 |
ttatagagcatataatccctatatgacaacacattaccatgttcaaagcatggaagagaatcc |
10979050 |
T |
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