View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9872_low_23 (Length: 239)
Name: NF9872_low_23
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4409686 - 4409461
Alignment:
| Q |
1 |
aatatcaaaagcatgcattggtccaatatgcatgaacattaacaatatttttaattcaagtatcccaaacttcaaaagcacattttttaattttcacaga |
100 |
Q |
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| T |
4409686 |
aatatcaaaagcatgcattggtccaatatgcatgaacattaacaatatttttaattcaagtatcccaaactccaaaagcacattttttaattttcacaga |
4409587 |
T |
|
| Q |
101 |
tcccatcaagatttattgcatagtgcataccattcatttctctaatccaatacacac-aaaaggctcaaaaaactttacattataccatat-nnnnnnnn |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
4409586 |
tcccatcaagatttattgcatagtgcataccattcatttctctaatccaatacacacaaaaaagctcaaaaaactttacattataccatataaaaaaaaa |
4409487 |
T |
|
| Q |
199 |
tcacctcaagaataacaaaagcattg |
224 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
4409486 |
tcacctcaagaataacaaaagcattg |
4409461 |
T |
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