View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9872_low_27 (Length: 231)
Name: NF9872_low_27
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 6818064 - 6818266
Alignment:
| Q |
18 |
aatattggcatgtacaatacccaagcgaagaaatattaagttttaggggatcaatataatcaaactttcttgtgactcgtggactaaatattaagtttt- |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6818064 |
aatattggcatgtacaatacacaagcgaagaaatattaagttttaggggatcaatataatcaaactttcttgtgactccaggactaaatattaagttttt |
6818163 |
T |
|
| Q |
117 |
-attaaactgttatatttgcaaggacgataaagacattgtaggctttgtatcccaacaatgagaggactaactcgtggttattttatgtacttaccaaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6818164 |
tattaaactgttatatttgcaaggacgataaagatattgtaggctttgtatcccaacaatgagaagactaactcgtggttattttatgtacttaccaaca |
6818263 |
T |
|
| Q |
216 |
cca |
218 |
Q |
| |
|
||| |
|
|
| T |
6818264 |
cca |
6818266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 6832536 - 6832636
Alignment:
| Q |
120 |
aaactgttatatttgcaaggacgataaagacattgtaggctttgtatcccaacaatgagaggactaactcgtggttattttatgtacttaccaacaccaa |
219 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||| ||||||||||||| |||||||||| |||||| | ||| ||||||||||||||||| ||||||| |
|
|
| T |
6832536 |
aaactgttatctttgtcaggacgataaagatattgaaggctttgtatcctaacaatgagaagactaatgcatggctattttatgtacttaccgacaccaa |
6832635 |
T |
|
| Q |
220 |
a |
220 |
Q |
| |
|
| |
|
|
| T |
6832636 |
a |
6832636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University