View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9872_low_29 (Length: 202)

Name: NF9872_low_29
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9872_low_29
NF9872_low_29
[»] scaffold0003 (1 HSPs)
scaffold0003 (2-184)||(64650-64832)
[»] chr6 (27 HSPs)
chr6 (2-184)||(27422531-27422713)
chr6 (1-184)||(26651034-26651217)
chr6 (1-184)||(26757002-26757185)
chr6 (70-184)||(26966097-26966211)
chr6 (77-184)||(27714144-27714251)
chr6 (1-135)||(26964279-26964411)
chr6 (77-184)||(27702377-27702484)
chr6 (81-175)||(26640678-26640772)
chr6 (81-175)||(26746644-26746738)
chr6 (77-184)||(26628012-26628119)
chr6 (77-184)||(26733989-26734096)
chr6 (79-184)||(26828368-26828473)
chr6 (78-160)||(26890066-26890148)
chr6 (75-170)||(26631458-26631553)
chr6 (75-170)||(26737433-26737528)
chr6 (2-78)||(26629546-26629622)
chr6 (2-78)||(26735522-26735598)
chr6 (77-139)||(27652343-27652405)
chr6 (77-160)||(31291376-31291459)
chr6 (79-172)||(26853623-26853714)
chr6 (125-184)||(27652280-27652339)
chr6 (1-55)||(27652530-27652584)
chr6 (2-68)||(31291198-31291264)
chr6 (124-171)||(28790203-28790250)
chr6 (113-158)||(27588442-27588487)
chr6 (77-185)||(27712708-27712817)
chr6 (121-157)||(26807297-26807333)
[»] scaffold0349 (1 HSPs)
scaffold0349 (77-184)||(17693-17800)
[»] chr8 (1 HSPs)
chr8 (77-184)||(29270037-29270144)
[»] chr4 (3 HSPs)
chr4 (2-68)||(18692628-18692694)
chr4 (77-184)||(5083085-5083194)
chr4 (28-68)||(18674557-18674597)
[»] scaffold0277 (2 HSPs)
scaffold0277 (113-171)||(816-874)
scaffold0277 (124-171)||(9949-9996)
[»] chr1 (1 HSPs)
chr1 (110-172)||(26141211-26141273)
[»] scaffold0419 (1 HSPs)
scaffold0419 (124-171)||(11349-11396)


Alignment Details
Target: scaffold0003 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 64650 - 64832
Alignment:
Q  2 tggtttgtatgactatttcaagagtggatcctctcttgttgaaataaacatgaggatgttatgtttcaaattcaggcaacttttctctaactaaaactaa 101  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||  |||||||| ||| |||||||||||||||||||| ||||||||    
T  64650 tggtttgtatgacaatttcaagagtggattctctcttgttgaaataaacataaagaaattatgtttgaaactcaggcaacttttctctaacgaaaactaa 64749  T
Q  102 gcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcgacatgtcta 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  64750 gcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcgacatgtcta 64832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 2e-75; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 27422713 - 27422531
Alignment:
Q  2 tggtttgtatgactatttcaagagtggatcctctcttgttgaaataaacatgaggatgttatgtttcaaattcaggcaacttttctctaactaaaactaa 101  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||  |||||||| ||| |||||||||||||||||||| ||||||||    
T  27422713 tggtttgtatgacaatttcaagagtggattctctcttgttgaaataaacataaagaaattatgtttgaaactcaggcaacttttctctaacgaaaactaa 27422614  T
Q  102 gcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcgacatgtcta 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27422613 gcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcgacatgtcta 27422531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 26651034 - 26651217
Alignment:
Q  1 gtggtttgtatgactatttcaagagtggatcctctcttgttgaaataaacatgaggatgttatgtttcaaattcaggcaacttttctctaactaaaacta 100  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||||||||||| |||||| |||| |||||||    
T  26651034 gtggtttgtttgacaatttcaaaagtggatcctctcttgttgaaataaacataaggtagttatgtttcaaattcaggcaagttttctttaaccaaaacta 26651133  T
Q  101 agcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcgacatgtcta 184  Q
     | ||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  26651134 cgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcgatatgtcta 26651217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 26757002 - 26757185
Alignment:
Q  1 gtggtttgtatgactatttcaagagtggatcctctcttgttgaaataaacatgaggatgttatgtttcaaattcaggcaacttttctctaactaaaacta 100  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||||||||||| |||||| |||| |||||||    
T  26757002 gtggtttgtttgacaatttcaaaagtggatcctctcttgttgaaataaacataaggtagttatgtttcaaattcaggcaagttttctttaaccaaaacta 26757101  T
Q  101 agcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcgacatgtcta 184  Q
     | ||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  26757102 cgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcgatatgtcta 26757185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 26966097 - 26966211
Alignment:
Q  70 aattcaggcaacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgt 169  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| |||    
T  26966097 aattcaggcaacttttctcaaaccaaaactaagcttttacttgttctttgactgtacattgtcaggacaccatctgtagtcatctggctatttgcactgt 26966196  T
Q  170 catgcgacatgtcta 184  Q
    |||||||||||||||    
T  26966197 catgcgacatgtcta 26966211  T

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Target: chr6; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 27714251 - 27714144
Alignment:
Q  77 gcaacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcga 176  Q
    |||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  27714251 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtcatgcga 27714152  T
Q  177 catgtcta 184  Q
    || |||||    
T  27714151 caagtcta 27714144  T

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Target: chr6; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 26964279 - 26964411
Alignment:
Q  1 gtggtttgtatgactatttcaagagtggatcctctcttgttgaaataaacatgaggatgttatgtttcaaattcaggcaacttttctctaactaaaacta 100  Q
    |||||||||| ||| ||||||| |||||||||||||  |||||||||||||| |||  |||||||||||||||||||||| || |||||||| |||||||    
T  26964279 gtggtttgtacgacaatttcaaaagtggatcctctc--gttgaaataaacataaggtagttatgtttcaaattcaggcaagttatctctaaccaaaacta 26964376  T
Q  101 agcatttacttgttctttgtctgtacattgtcagg 135  Q
       |||||||| |||||||||||||||||||||||    
T  26964377 caaatttactttttctttgtctgtacattgtcagg 26964411  T

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Target: chr6; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 27702484 - 27702377
Alignment:
Q  77 gcaacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcga 176  Q
    |||||||||||||||| ||||||||| |||| |||||| |||| ||||||||||||||||||| |  ||||||||||||||||| |||||||||||||||    
T  27702484 gcaacttttctctaaccaaaactaagtattttcttgttttttgactgtacattgtcaggaaacgacatgtagtcatctggctatttgcattgtcatgcga 27702385  T
Q  177 catgtcta 184  Q
    || |||||    
T  27702384 caagtcta 27702377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 26640678 - 26640772
Alignment:
Q  81 cttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcg 175  Q
    |||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||||||||||    
T  26640678 cttttctctatccaaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtgatctggctattcgcattgtcatgcg 26640772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 26746644 - 26746738
Alignment:
Q  81 cttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcg 175  Q
    |||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||||||||||    
T  26746644 cttttctctatccaaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtgatctggctattcgcattgtcatgcg 26746738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 26628012 - 26628119
Alignment:
Q  77 gcaacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcga 176  Q
    |||||||||||||||| ||||||||| ||||  |||||||||| |||||||||||||||||||||  | ||||||||||||| | ||||||||||||| |    
T  26628012 gcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaa 26628111  T
Q  177 catgtcta 184  Q
     |||||||    
T  26628112 gatgtcta 26628119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 26733989 - 26734096
Alignment:
Q  77 gcaacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcga 176  Q
    |||||||||||||||| ||||||||| ||||  |||||||||| |||||||||||||||||||||  | ||||||||||||| | ||||||||||||| |    
T  26733989 gcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaa 26734088  T
Q  177 catgtcta 184  Q
     |||||||    
T  26734089 gatgtcta 26734096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 26828368 - 26828473
Alignment:
Q  79 aacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcgaca 178  Q
    |||||||||||| | |||||||||||||| |||||| |||| ||||||||||||||||  ||||||||||| ||||||||||  |||||||||||||  |    
T  26828368 aacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcggga 26828467  T
Q  179 tgtcta 184  Q
    ||||||    
T  26828468 tgtcta 26828473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 26890066 - 26890148
Alignment:
Q  78 caacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctat 160  Q
    ||||||||||||||| |||||||| |||||| || || |||| ||||||||||||||||||| ||||||||||||||||||||    
T  26890066 caacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctat 26890148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 26631458 - 26631553
Alignment:
Q  75 aggcaacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtc 170  Q
    |||||||||||||||||| ||||| ||||||||||||| |||| |  |||||||| ||||||| ||||||||||||||||||| |  |||||||||    
T  26631458 aggcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtc 26631553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 26737433 - 26737528
Alignment:
Q  75 aggcaacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtc 170  Q
    |||||||||||||||||| ||||| ||||||||||||| |||| |  |||||||| ||||||| ||||||||||||||||||| |  |||||||||    
T  26737433 aggcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtc 26737528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 26629546 - 26629622
Alignment:
Q  2 tggtttgtatgactatttcaagagtggatcctctcttgttgaaataaacatgaggatgttatgtttcaaattcaggc 78  Q
    |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||| ||||    
T  26629546 tggtttatatgacaatttcaagagtggatcctctcatgttggaataaacataaggaagttatgtttcaaatttaggc 26629622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 26735522 - 26735598
Alignment:
Q  2 tggtttgtatgactatttcaagagtggatcctctcttgttgaaataaacatgaggatgttatgtttcaaattcaggc 78  Q
    |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||| ||||    
T  26735522 tggtttatatgacaatttcaagagtggatcctctcatgttggaataaacataaggaagttatgtttcaaatttaggc 26735598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 27652405 - 27652343
Alignment:
Q  77 gcaacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaac 139  Q
    |||||||||||||||| |||||||||||||||||||||| ||| || ||||||||||||||||    
T  27652405 gcaacttttctctaaccaaaactaagcatttacttgttcattgactttacattgtcaggaaac 27652343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 31291376 - 31291459
Alignment:
Q  77 gcaacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctat 160  Q
    |||||||||||||||| ||||||||| |||| ||||||||| |  |||  |||| |||||||||||||||| ||||||||||||    
T  31291376 gcaacttttctctaacaaaaactaagtattttcttgttcttcgattgtgaattgccaggaaaccatctgtaatcatctggctat 31291459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 26853623 - 26853714
Alignment:
Q  79 aacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcat 172  Q
    |||||||||||||| ||||||||| ||| |||||||||||| | || ||||||||| |  |||||||| ||||||||||||| |||||||||||    
T  26853623 aacttttctctaaccaaaactaagaatt-acttgttctttgaccgtgcattgtcagtat-ccatctgtggtcatctggctatttgcattgtcat 26853714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 27652339 - 27652280
Alignment:
Q  125 acattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcgacatgtcta 184  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||||| || |||||||    
T  27652339 acattgtcaggaaaccatctatggtcatctggctatttgcattgtcatgtgatatgtcta 27652280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27652584 - 27652530
Alignment:
Q  1 gtggtttgtatgactatttcaagagtggatcctctcttgttgaaataaacatgag 55  Q
    ||||| |||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  27652584 gtggtgtgtatgaaaatttcaagagtggatcctctcatgttgaaataaacatgag 27652530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 31291198 - 31291264
Alignment:
Q  2 tggtttgtatgactatttcaagagtggatcctctcttgttgaaataaacatgaggatgttatgtttc 68  Q
    |||| ||||| || ||||||||||||||||||||| |||||||||||| ||||  | ||||||||||    
T  31291198 tggtgtgtattacaatttcaagagtggatcctctcatgttgaaataaaaatgactaagttatgtttc 31291264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 28790203 - 28790250
Alignment:
Q  124 tacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtca 171  Q
    ||||||||||||||||||||||||||| ||||||| | ||| ||||||    
T  28790203 tacattgtcaggaaaccatctgtagtcgtctggctttttgcgttgtca 28790250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 27588487 - 27588442
Alignment:
Q  113 ttctttgtctgtacattgtcaggaaaccatctgtagtcatctggct 158  Q
    ||||||| ||||| |||||||||||||||||||||||  |||||||    
T  27588487 ttctttgactgtatattgtcaggaaaccatctgtagttgtctggct 27588442  T

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Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 27712817 - 27712708
Alignment:
Q  77 gcaacttttctctaactaa-aactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcg 175  Q
    ||||||||||||||||||  ||||||||||  | || ||||||   ||||||||| ||  ||||||||| ||||  ||||||| | ||||||||||| ||    
T  27712817 gcaacttttctctaactattaactaagcatccatttcttcttttattgtacattgacaaaaaaccatctatagttgtctggctttttgcattgtcatacg 27712718  T
Q  176 acatgtctat 185  Q
    | ||||||||    
T  27712717 agatgtctat 27712708  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 26807297 - 26807333
Alignment:
Q  121 ctgtacattgtcaggaaaccatctgtagtcatctggc 157  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  26807297 ctgtactttgtcaggaaaccatctgtagtcgtctggc 26807333  T

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Target: scaffold0349 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 17693 - 17800
Alignment:
Q  77 gcaacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcga 176  Q
    |||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  17693 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtcatgcga 17792  T
Q  177 catgtcta 184  Q
    || |||||    
T  17793 caagtcta 17800  T

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Target: chr8 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 29270144 - 29270037
Alignment:
Q  77 gcaacttttctctaactaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgcga 176  Q
    |||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  29270144 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtcatgcga 29270045  T
Q  177 catgtcta 184  Q
    || |||||    
T  29270044 caagtcta 29270037  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 18692694 - 18692628
Alignment:
Q  2 tggtttgtatgactatttcaagagtggatcctctcttgttgaaataaacatgaggatgttatgtttc 68  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  18692694 tggtgtgtatgacaatttcaagagtggatcctctcatgttgaaataaacatgaggacgttatgtttc 18692628  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 5083085 - 5083194
Alignment:
Q  77 gcaacttttctct-aacta-aaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcatgc 174  Q
    ||||||||||||| ||||| |||||||||||| | || ||||||  |||||||||| ||| ||||||||||||||  ||||||| | ||||||||||| |    
T  5083085 gcaacttttctcttaactataaactaagcattcatttcttcttttactgtacattgacagaaaaccatctgtagttgtctggctttttgcattgtcatac 5083184  T
Q  175 gacatgtcta 184  Q
    || |||||||    
T  5083185 gagatgtcta 5083194  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 18674597 - 18674557
Alignment:
Q  28 gatcctctcttgttgaaataaacatgaggatgttatgtttc 68  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  18674597 gatcctctcatgttgaaataaacatgaggacgttatgtttc 18674557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 874 - 816
Alignment:
Q  113 ttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtca 171  Q
    ||||||| | |||||||||||||||||||||||||||| ||||||| | ||| ||||||    
T  874 ttctttgacagtacattgtcaggaaaccatctgtagtcgtctggctttttgcgttgtca 816  T

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Target: scaffold0277; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 9996 - 9949
Alignment:
Q  124 tacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtca 171  Q
    ||||||||||||||||||||||||||| ||||||| | ||| ||||||    
T  9996 tacattgtcaggaaaccatctgtagtcgtctggctttttgcgttgtca 9949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 26141211 - 26141273
Alignment:
Q  110 ttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtcat 172  Q
    ||||||||||  ||||||||||||| ||||||||| ||||  ||||||||| |||||||||||    
T  26141211 ttgttctttgaatgtacattgtcagaaaaccatctatagttgtctggctatttgcattgtcat 26141273  T

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Target: scaffold0419 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 11349 - 11396
Alignment:
Q  124 tacattgtcaggaaaccatctgtagtcatctggctatgtgcattgtca 171  Q
    ||||||||||||||||||||||||||| ||||||| | ||| ||||||    
T  11349 tacattgtcaggaaaccatctgtagtcgtctggctttttgcgttgtca 11396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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