View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9872_low_5 (Length: 358)
Name: NF9872_low_5
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 520417 - 520084
Alignment:
| Q |
1 |
ctttccaaaacgatagatagaacgctcaaccaagaagcaaacaaagaccatgacagtaacaacggaggcaactgaatatgtaggtgtctcagctagagaa |
100 |
Q |
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| T |
520417 |
ctttccaaaacggtagatagaacgctcaaccaagaagcaaacaaagaccatgacagtaacaacggaggcaactgaatatgtaggtgtctcagctagagaa |
520318 |
T |
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| Q |
101 |
cgagcttgctccacaacatgttccattataatatttcttcttattcttacatcaacagaacacagtctttagttcattaaaatgaagagcagatagatgg |
200 |
Q |
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| T |
520317 |
cgaccttgctccacagcatgttccattataatatttcttctta------catcaacagaacacagtctttagttcattaaaatgaagagcagat----gg |
520228 |
T |
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| Q |
201 |
gatccaggaaggaaaaagagaagttcaatctgagagtgttttgttttatatgattaatt-aatttagttgaaaggtgcagtgcatgtgtgtggagagagg |
299 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||| |
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| T |
520227 |
gatccaggaaggaaaaagagaagctcaatctgagagtgttttgttttatatgattaatttaatttagttgaaaggtgca-----tatatgtggagagagg |
520133 |
T |
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| Q |
300 |
acattaattaaaatattgaatatgcaagtatagatcctactcacctttg |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
520132 |
acattaattaaaatattgaatatgcaagtatagatcctactcacttttg |
520084 |
T |
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