View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9872_low_6 (Length: 345)
Name: NF9872_low_6
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 15241632 - 15241941
Alignment:
| Q |
19 |
agagtaggattaatcaaattgtttcaaataataatttcgatgaattggttttaaagtggagaccactatgaggcactatctaatttattatcccttcttg |
118 |
Q |
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| T |
15241632 |
agagtaggattaatcaaattgtttcaaataat---ttcgatgaattggttttaaagtggagaccactatgaggcactatctaatttat---cccttcttg |
15241725 |
T |
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| Q |
119 |
ttgttatatgataatgtgacgttaatgatgttcttttgttgcagtaaatcgtttacaatattgctgtttttcaatactctctattagcataaaatgttgt |
218 |
Q |
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| T |
15241726 |
ttgttatatgataatgtgacgttaatgatgttcttttgttgcagtaaatcgtttacaatgttg---ttttgcaatactctctattagcacaaaatgttgt |
15241822 |
T |
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| Q |
219 |
caaataggtctatatatagtggtgtggtgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgatattttgttctgtgt |
318 |
Q |
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| T |
15241823 |
caaataggtctata----gtggtgtggtgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgatattttgttctgtgt |
15241918 |
T |
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| Q |
319 |
tttggtcgagtcctttgcttctc |
341 |
Q |
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| T |
15241919 |
tttggtcaagtcttttgattctc |
15241941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 34227386 - 34227444
Alignment:
| Q |
246 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgat |
304 |
Q |
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| T |
34227386 |
tgtgtagtgaaatttgaacaaactgttattttccatgatcggcaattgacaacactgat |
34227444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 33651744 - 33651792
Alignment:
| Q |
246 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttga |
294 |
Q |
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| T |
33651744 |
tgtgtagctaaatttgaacaaactactattttctgtgatctgcaattga |
33651792 |
T |
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