View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9872_low_7 (Length: 344)
Name: NF9872_low_7
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 143 - 337
Target Start/End: Original strand, 34349357 - 34349550
Alignment:
| Q |
143 |
caattgagatatgcataagatgacatgaatgttacacaacgaatacgcgagattgtgtgttttcgattaacttcaacagttcttcgtgaattaggcagat |
242 |
Q |
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| T |
34349357 |
caattgagatatgcataagatgacatgaatgtta-acaatgaatacgcgagattgtgtgtttttgattaacttaaacagttcttcgtgaattaggcagat |
34349455 |
T |
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| Q |
243 |
aagtaggtgacagcaaagctaaacgatattcaatcgtcaaaccaacatctcggagagccttagatagcagtgctagcattctagaatcaccacca |
337 |
Q |
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| T |
34349456 |
aagtaggtgacagcaaagctaaacgatattcaattgtcaaaccaacatctcggagagccttagatagcagtgctagcattctagaatcgccacca |
34349550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 34349232 - 34349312
Alignment:
| Q |
18 |
gatcaaagaatagtggggatatactagtaaaccaaaaaggaaggagatacgaataacctctaatttatgttttcagaccag |
98 |
Q |
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| T |
34349232 |
gatcaaagaatagtggggatatactagtaaaccaaaaaggaaggagatacgaataacctttaatttatgttttcagaccag |
34349312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 34605162 - 34605057
Alignment:
| Q |
232 |
attaggcagataagtaggtgacagcaaagctaaacgatattcaatcgtcaaaccaacatctcggagagccttagatagcagtgctagcattctagaatca |
331 |
Q |
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||||| || ||||||| |||| ||||||||||||||||||||||| | |||||| ||| |||| |||| ||||| ||||||||||| | ||| ||| |
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| T |
34605162 |
attagacatataagtaagtgatggcaaagctaaacgatattcaatcattgaaccaatctcttggagggcctcggatagaagtgctagcatcccagactca |
34605063 |
T |
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| Q |
332 |
ccacca |
337 |
Q |
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|||||| |
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| T |
34605062 |
ccacca |
34605057 |
T |
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