View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9872_low_8 (Length: 335)
Name: NF9872_low_8
Description: NF9872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9872_low_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 12144903 - 12145236
Alignment:
| Q |
1 |
taatttacttacagagaaaatcattgtcttcaaggcctttagcactgatcaaaacaacttcaagcgttccacgaggcatctttctctgatttcaaaaatt |
100 |
Q |
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| T |
12144903 |
taatttacttacagagaaaatcattgtcttcaaggcctttagcactgatcaaaacaacttcaagcgttccacgaggcatctttctctgatttcaaaaatt |
12145002 |
T |
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| Q |
101 |
ctaaatggttaagagcttttgattctagattatgattatctctaaaagattgaattcactgtaccnnnnnnnntgcctgaatcagtgtatatatagtatt |
200 |
Q |
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| T |
12145003 |
ctaaatggttaagagcttttgattctagattatgattatctctaaaagattgaattcactgtacc-aaaaaaatgcctgaatcagtgtatatatagtatt |
12145101 |
T |
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| Q |
201 |
aaattgagtttgattagatccaacttcttttccttttaaatgttgagtccctttaggattgttttttccaatatacaatatgcactctaactagcttatg |
300 |
Q |
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| T |
12145102 |
aaattgagtttgattggatccaactttttttccttttaaatgttgagtccctttaggattgttttttccaatatacaatatgcactctaaatagcttatg |
12145201 |
T |
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| Q |
301 |
tcattattttctacgtatatatacatacatattcc |
335 |
Q |
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| T |
12145202 |
tcattattttctacgcatatatacatacatattcc |
12145236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 12151683 - 12151770
Alignment:
| Q |
5 |
ttacttacagagaaaatcattgtcttcaaggcctttagcactgatcaaaacaacttcaagcgttccacgaggcatctttctctgattt |
92 |
Q |
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| T |
12151683 |
ttacttacataaaaaatcattgtcatcaagacctttagcactgatcaaaataacttcaagagttccacgaggcatctttctttgattt |
12151770 |
T |
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