View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_1D_high_13 (Length: 295)
Name: NF9873_1D_high_13
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_high_13 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 385850 - 386124
Alignment:
| Q |
21 |
acaattcaatgactaatgcaggtttaaggccaggcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaa |
120 |
Q |
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| T |
385850 |
acaattcaatgactaatgcaggtttaaggccaggcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaa |
385949 |
T |
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| Q |
121 |
agttctacttgaaatgaagaccatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggttgatcttgctttg |
220 |
Q |
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| T |
385950 |
agttctacttgaaatgaagacgatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggttgatcttgctttg |
386049 |
T |
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| Q |
221 |
aggtggctgcgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgc |
295 |
Q |
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| T |
386050 |
aggtggctgcgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgc |
386124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 38729692 - 38729422
Alignment:
| Q |
21 |
acaattcaatgactaatgcaggtttaaggccaggcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaa |
120 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
38729692 |
acaattcaatgactaatgcaggtttaaggccaggcctgagcacttatactgttcttttatctctacttgctaataagaagctggtggatgttgctgccaa |
38729593 |
T |
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| Q |
121 |
agttctacttgaaatgaagaccatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggttgatcttgctttg |
220 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
38729592 |
agttctacttgaaatgaagacaatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcagtcgatcttgctttg |
38729493 |
T |
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| Q |
221 |
aggtggctgcgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtc |
291 |
Q |
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|| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| | |||||||||||||| |
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| T |
38729492 |
agatggctacgtttcatgggttcctcagggatcagaaccaataattttataatcaggcagttgtttgagtc |
38729422 |
T |
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