View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9873_1D_high_2 (Length: 705)
Name: NF9873_1D_high_2
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 23 - 632
Target Start/End: Original strand, 31768940 - 31769546
Alignment:
| Q |
23 |
ctcacttgtgataacaagtaagtaatatcacgagcttctccttacaaatagcaacaccgataatataagaatttcaaactattttcaaaaataagtttgt |
122 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31768940 |
ctcacttgtgataacaagtaa----tatcacgagtttctacttacaaatagaaacaccgataatataagaatttcaaactattttcaaaaataagtttgt |
31769035 |
T |
|
| Q |
123 |
cttagatcaaatgaaacacttgcataagagtcacttaattttattttattttcagaagaagctttaaaagatattattaatatgtttagaaagctttaaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31769036 |
cttagatcaaatgaaacacttgcataagagtcacttaattttattttattttcagaagaagctttaaaagatattattaatatgtttagaaagctttaaa |
31769135 |
T |
|
| Q |
223 |
agaannnnnnnnn-agaagaagctttgaaagatattattaataagtttggaaaggtcctatgcaattatgcatacagcagcttagtactggcggtcccct |
321 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31769136 |
agatttttttttttagaagaagctttgaaagatattattaataagtttagaaaggccctatgcaattatgcatacagcagtttagtactggcggtcccct |
31769235 |
T |
|
| Q |
322 |
ggtgtaagccttaataatgtatggcgggtgggtttgattttaaaggctgattcttctggtctagtgggggtgtcctgtctagtgcccttccaaaattgtt |
421 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31769236 |
ggtgtaagccttaataatgtatggtgggtgggtttgattttaaaggctgattcttctggtctagtgggggtgtcctgtctagtgcccttccaaaattatt |
31769335 |
T |
|
| Q |
422 |
aatattggtgtcacatcttgctcaccttcacattggacagcttctttttggtgctcatttcagggtcttgtcaccaataggggatccacttttgccaaaa |
521 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31769336 |
aatattggtgtcatatcttgctcaccttcacattggacagcttctttttggtgctcatttcagggtcttgtcaccaataggggatccacttttgccaaaa |
31769435 |
T |
|
| Q |
522 |
atgttatattccaattggtccttattggtgcatacaaaataaatcgtatcaatttgattttctgaaatcttaaatgtttgccaaatatagtcctatatac |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31769436 |
atgttatattccaattggtccttattggtgcatacaaaataaatcgtatcaatttgattttctgaaatcttaaatgtttgccaaatatagtcctatatac |
31769535 |
T |
|
| Q |
622 |
acaattcaaat |
632 |
Q |
| |
|
||||||||||| |
|
|
| T |
31769536 |
acaattcaaat |
31769546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 641 - 691
Target Start/End: Original strand, 31769532 - 31769582
Alignment:
| Q |
641 |
atacacaattcaaatcttttttggagtgtgtaggcaattacttgatgatgt |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31769532 |
atacacaattcaaatcttttttggagtgtgtaggcaattacttgatgatgt |
31769582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University