View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_1D_high_3 (Length: 568)
Name: NF9873_1D_high_3
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_high_3 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 505; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 16 - 568
Target Start/End: Original strand, 26267772 - 26268324
Alignment:
| Q |
16 |
ggacatcagcacaagaaactacagcgagatctttcttttctagctcttctttgatattatcaattacttcatagcctctcaaacttaaattaggaatagt |
115 |
Q |
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||||||||||||||||||| ||| || |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |
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| T |
26267772 |
ggacatcagcacaagaaaccacatcgggatctttcttttctagctcttctttgatgttatcaattacttcgtaacctctcaaacttaaattaggaatagt |
26267871 |
T |
|
| Q |
116 |
aaatgacttcagcttgaactactacagctaaacatatagtagttcatgctcaagccgtttactattctcaattttgaaacaaatcaatgtcattctcatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26267872 |
aaatgacttcagcttgaactactacagctaaacatatagtagttcatgctcaagccgtttactattctcaattttgaaacaaatcaatgtcattctcatg |
26267971 |
T |
|
| Q |
216 |
acaaagaacaatgaaattagattagccattcttaaataatattctatgaattgaaaagatgaatgaattgtgaagtaaatataattaatcacatgcatat |
315 |
Q |
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|||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26267972 |
acaaagaataatgaaagtagattagtcattcttaaataatattctatgaattcaaaagatgaatgaattgtgaagtaaatataattaatcacatgcatat |
26268071 |
T |
|
| Q |
316 |
gtgtgtgcacgcgcacgcgcgcatgcttgtgtgttgtaagaggatttagtttagtttagtttatggggttgtgtggcatatattttaattttagaatact |
415 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26268072 |
gtgtgtgcgcgcgcacgcgcgcatgcttgtgtgttgtgagaggatttagtttagtttagtttatggggttgtgtggcatatattttaattttagaatact |
26268171 |
T |
|
| Q |
416 |
tcgtattcataatatataagaatcttatttaccttgttcattcttatgaagttcaattctgaagttaaaacacaccgttaacaaatatattattattatg |
515 |
Q |
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| T |
26268172 |
tcgtattcataatatataagaatcttatttaccttgttcattcttatgaagttcaattctgaagttaaaacacaccgttaacaaatatattattattatg |
26268271 |
T |
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| Q |
516 |
attaactgattttgtttactaatttaaccacttctttacgtgagttcgaacta |
568 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26268272 |
attaactgattttgtttactaatttaaccacttctttacgtgagttcgaacta |
26268324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 150 - 568
Target Start/End: Original strand, 26265338 - 26265748
Alignment:
| Q |
150 |
tatagtagttcatgctcaagccgtttactattctcaattttgaaacaaatcaatgtcattctcatgacaaagaacaatgaaattagattagccattctta |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||| |
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| T |
26265338 |
tatagtagttcatgctcaagccgtttactattctcaattttgaaacaaatcaatatcattcttgtgacaaagaacaatgaaagtagattagtcattctta |
26265437 |
T |
|
| Q |
250 |
aataatattctatgaattgaaaagatgaatgaattgtgaagtaaatataattaatcacatgcatatgtgtgtgcacgcgcacgcgcgcatgcttgtgtgt |
349 |
Q |
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| T |
26265438 |
aatgatattctatgaattcaaaagatgtatgaattgtgaagtaaatgtaattagtcacaggcatgtgtgt----------acgcgcgcatgcttgtgtgt |
26265527 |
T |
|
| Q |
350 |
tgtaagaggatttagtttagtttagtttatggggttgtgtggcatatattttaattttagaatacttcgtattcataatatataagaatcttatttacct |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |
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| T |
26265528 |
tgtaagaggatttagtttagtttagtttatggggttgtgtggcatatattttaattttaaaatagttgatattcataatatataagaatcttatttacct |
26265627 |
T |
|
| Q |
450 |
tgttcattctt--atgaagttcaattctgaagttaaaacacaccgttaacaaatatattattattatgattaactgattttgtttactaatttaaccact |
547 |
Q |
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| T |
26265628 |
tctttattcttacataaagttcaattttgaagttaaaacacaccgttaacaaatatattattattattaataactgattttgtttactaatttaaccact |
26265727 |
T |
|
| Q |
548 |
tctttacgtgagttcgaacta |
568 |
Q |
| |
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||||||||||||||||||||| |
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| T |
26265728 |
tctttacgtgagttcgaacta |
26265748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 360 - 512
Target Start/End: Original strand, 26267185 - 26267338
Alignment:
| Q |
360 |
tttagtttagtttagtttatggggttgtgtggcatatattttaattttagaatacttcgtattcataatatataagaatcttatttaccttgttcattct |
459 |
Q |
| |
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|||| ||||||||||||| | ||||||| || ||||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||||| || | |
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| T |
26267185 |
tttactttagtttagtttgtagggttgtatgttatatattttaattatagaatacttgatattcat--tatataagaatcttgtttaccttgttctttat |
26267282 |
T |
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| Q |
460 |
ta--tgaagttca-attctgaagttaaaacacaccgttaacaaatatattattatt |
512 |
Q |
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| T |
26267283 |
tacgtgaagttgagtttttgaagttaatacacaccgttaacaaatatattattatt |
26267338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 26264557 - 26264680
Alignment:
| Q |
18 |
acatcagcacaagaaactacagcgagatctttcttttctagctcttctttgatattatcaattacttcatagcctctcaaacttaaattaggaatagtaa |
117 |
Q |
| |
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||||||||||| ||||| ||| | ||| |||||||||||||| |||| |||| ||| ||||||||||||||||||| ||||| ||||||||| ||||| |
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| T |
26264557 |
acatcagcacacgaaaccacaccaagacatttcttttctagctattctctgatgttaacaattacttcatagcctcttaaactcaaattaggagcagtaa |
26264656 |
T |
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| Q |
118 |
atgacttcagcttgaactactaca |
141 |
Q |
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||| ||| ||| |||||||||||| |
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| T |
26264657 |
atggcttgagcatgaactactaca |
26264680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 283
Target Start/End: Original strand, 26264699 - 26264793
Alignment:
| Q |
188 |
tttgaaacaaatcaatgtcattctcatgacaaagaacaatgaaattagattagccattcttaaataatattctatgaattgaaaagatgaatgaat |
283 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||| ||||| || ||||| |||| |||||| || || || |||| ||||||||||||||| |
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| T |
26264699 |
tttgaaacaagtcaatgtcattcccatgacaaagaacagtgaaagtatattagtcatttttaaatgatcttgta-aaatttaaaagatgaatgaat |
26264793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 413
Target Start/End: Original strand, 26266253 - 26266322
Alignment:
| Q |
344 |
gtgtgttgtaagaggatttagtttagtttagtttatggggttgtgtggcatatattttaattttagaata |
413 |
Q |
| |
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|||||| || |||| |||||||||| |||||||| | |||||||||| ||||||||||| |||||||||| |
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| T |
26266253 |
gtgtgtggtgagagaatttagtttattttagtttgtagggttgtgtgtcatatattttagttttagaata |
26266322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 519
Target Start/End: Complemental strand, 23574570 - 23574066
Alignment:
| Q |
18 |
acatcagcacaagaaactacagcgagatctttcttttctagctcttctttgatattatcaattacttcatagcctctcaaacttaaattaggaatagtaa |
117 |
Q |
| |
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|||||| |||||||||| ||| | || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23574570 |
acatcaacacaagaaaccacattgggacatttcttttctagctcttctttgatgttatcaattacttcatagcctctcaaacttaaattaggagtagtac |
23574471 |
T |
|
| Q |
118 |
atgacttcagcttgaactactacagctaaacatatagtagttcatgctcaagccgtttactattctcaattttgaaacaaatcaatgtcattctcatgac |
217 |
Q |
| |
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||||||| ||| ||||||||| || | | |||||||||| |||||||||||||| || ||||||||| ||||||||||||||||||||||| ||| |
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| T |
23574470 |
atgacttgagcatgaactactgcatgtttagccgtagtagttcacgctcaagccgtttattactctcaattt-gaaacaaatcaatgtcattctcaagac |
23574372 |
T |
|
| Q |
218 |
aaagaacaatgaaattagattagccattcttaaataatattctatgaattgaaaagatgaatgaattgtgaagtaaatataattaatcacatgcatatgt |
317 |
Q |
| |
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||||||| ||||| |||||||||||||||||| |||||||| || || ||||||||| ||||| |||||||||||||||||| |||||||||| ||| |
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| T |
23574371 |
aaagaacggtgaaa---gattagccattcttaaatgatattctaagattttaaaagatgagtgaatcgtgaagtaaatataattagtcacatgcatgtgt |
23574275 |
T |
|
| Q |
318 |
gtgtgcacg-cgcacgcgcgcatgcttgtgtgttgtaagagga---------tttagtttagtttagtttatggggttgtgtggcatatattttaatttt |
407 |
Q |
| |
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|||| || ||||||||| | ||| ||||| || |||||| |||||||||||||||||| | |||||||||||||||||||||| |||| |
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| T |
23574274 |
gtgtaggcgacgcacgcgc-cttgc--atgtgtcgtgagaggattagtttagtttagtttagtttagtttgtagggttgtgtggcatatattttagtttt |
23574178 |
T |
|
| Q |
408 |
agaatacttcgtattcataatatataagaatcttatttaccttgttcattctt--atgaagttcaattctgaagttaaaacacaccgttaacaaatatat |
505 |
Q |
| |
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||||||||| |||| ||| |||||||||||| |||| | ||| ||||| |||||||||| || ||||||||||| | ||||||||||||||||| |
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| T |
23574177 |
agaatacttgatattaata--ttataagaatcttttttattctattctttcttacatgaagttcagttttgaagttaaaatagaccgttaacaaatatat |
23574080 |
T |
|
| Q |
506 |
tattattatgatta |
519 |
Q |
| |
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||||||||| |||| |
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| T |
23574079 |
tattattattatta |
23574066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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