View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_1D_high_9 (Length: 345)

Name: NF9873_1D_high_9
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_1D_high_9
NF9873_1D_high_9
[»] chr8 (3 HSPs)
chr8 (1-180)||(32915240-32915419)
chr8 (192-308)||(32916032-32916148)
chr8 (67-156)||(24945367-24945456)
[»] chr3 (1 HSPs)
chr3 (2-156)||(9359332-9359486)
[»] chr1 (1 HSPs)
chr1 (5-162)||(2308149-2308306)
[»] scaffold0001 (1 HSPs)
scaffold0001 (68-152)||(520131-520215)
[»] chr4 (1 HSPs)
chr4 (65-160)||(51091110-51091205)
[»] chr2 (1 HSPs)
chr2 (110-156)||(41195215-41195261)
[»] chr7 (1 HSPs)
chr7 (97-162)||(43805405-43805470)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 32915240 - 32915419
Alignment:
Q  1 acatgtttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32915240 acatgcttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatc 32915339  T
Q  101 aaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacctttcaaattatctacttcctc 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32915340 aaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacctttcaaattatctacttcctc 32915419  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 192 - 308
Target Start/End: Original strand, 32916032 - 32916148
Alignment:
Q  192 aagaggtgggggaaatggtggtggaaattaaggtattatcgtggaattgcaactattttgtttatggggttgttagtggcagcttattgtttttgaggtg 291  Q
    ||||||||||||||||||||| ||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32916032 aagaggtgggggaaatggtggaggatattaagttattatggtggaattgcaactattttgtttatggggttgttagtggcagcttattgtttttgaggtg 32916131  T
Q  292 cttggtgttccgtttta 308  Q
    |||||||||||||||||    
T  32916132 cttggtgttccgtttta 32916148  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 24945456 - 24945367
Alignment:
Q  67 atcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa 156  Q
    ||||||||||| |||||||||||| || |||||  ||||||| || ||||||||||| | ||||||||||||||||||||| ||||||||    
T  24945456 atcatccacatatttcacctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccacaa 24945367  T

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Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 9359332 - 9359486
Alignment:
Q  2 catgtttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatca 101  Q
    |||||||| ||||  |||||| |||||||||||||||| |||||||| ||||| |||| |||||||||||||||||| ||||||||||| || || ||||    
T  9359332 catgtttgcatatcaagcctatacaaactccaccgccacgaattaacaacaatctccgacaaaagatcatccacatgcttcacctcatttcggaagatca 9359431  T
Q  102 aatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa 156  Q
     ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  9359432 tatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaa 9359486  T

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Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 2308306 - 2308149
Alignment:
Q  5 gtttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaat 104  Q
    ||||| ||||| || ||| |||||||||||| ||||||||| |||||||| |||||||||| ||| ||||||||| | ||||||||| | |||||| |||    
T  2308306 gtttgcatattaagtctagacaaactccacctccatgaatttaccacaatctccgccaaaatatcttccacatgtattacctcattaaggaaaatcgaat 2308207  T
Q  105 gattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaaccttt 162  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2308206 ggttcctcgcttgccaaatagcccatatagttgcatgccaaatgatccacaaaccttt 2308149  T

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Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 520131 - 520215
Alignment:
Q  68 tcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatcc 152  Q
    |||||||||  |||||||||||| || || || |||||||| |||||||||||||| | |||||||||||||| |||||| ||||    
T  520131 tcatccacagatttcacctcattccggaatataaaatgatttctcgcttgccaaattgaccaaatagttgcatcccaaataatcc 520215  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 51091205 - 51091110
Alignment:
Q  65 agatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacct 160  Q
    ||||| ||||||| |||||| ||||| |||||||| |  ||||||||  |||||||||   || ||||||||||||||||||| ||||| ||||||    
T  51091205 agatcttccacatatttcacatcattccgaaaaataatgtgattcctaacttgccaaaggaccaaaatagttgcatgccaaatcatccataaacct 51091110  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 41195215 - 41195261
Alignment:
Q  110 ctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa 156  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  41195215 ctcgcttgccaaataacccaaatagtagcatgccaaataatccacaa 41195261  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 43805470 - 43805405
Alignment:
Q  97 aatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaaccttt 162  Q
    |||||||||||| ||| ||||||| ||| || ||| ||||||||||||||| ||||| ||||||||    
T  43805470 aatcaaatgatttctcacttgccagataccctaaagagttgcatgccaaataatccataaaccttt 43805405  T

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