View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_1D_low_10 (Length: 345)
Name: NF9873_1D_low_10
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_low_10 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 32915240 - 32915419
Alignment:
| Q |
1 |
acatgtttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatc |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32915240 |
acatgcttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatc |
32915339 |
T |
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| Q |
101 |
aaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacctttcaaattatctacttcctc |
180 |
Q |
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| T |
32915340 |
aaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacctttcaaattatctacttcctc |
32915419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 192 - 308
Target Start/End: Original strand, 32916032 - 32916148
Alignment:
| Q |
192 |
aagaggtgggggaaatggtggtggaaattaaggtattatcgtggaattgcaactattttgtttatggggttgttagtggcagcttattgtttttgaggtg |
291 |
Q |
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||||||||||||||||||||| ||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32916032 |
aagaggtgggggaaatggtggaggatattaagttattatggtggaattgcaactattttgtttatggggttgttagtggcagcttattgtttttgaggtg |
32916131 |
T |
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| Q |
292 |
cttggtgttccgtttta |
308 |
Q |
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| T |
32916132 |
cttggtgttccgtttta |
32916148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 24945456 - 24945367
Alignment:
| Q |
67 |
atcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa |
156 |
Q |
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| T |
24945456 |
atcatccacatatttcacctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccacaa |
24945367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 9359332 - 9359486
Alignment:
| Q |
2 |
catgtttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatca |
101 |
Q |
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|||||||| |||| |||||| |||||||||||||||| |||||||| ||||| |||| |||||||||||||||||| ||||||||||| || || |||| |
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| T |
9359332 |
catgtttgcatatcaagcctatacaaactccaccgccacgaattaacaacaatctccgacaaaagatcatccacatgcttcacctcatttcggaagatca |
9359431 |
T |
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| Q |
102 |
aatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa |
156 |
Q |
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| T |
9359432 |
tatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaa |
9359486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 2308306 - 2308149
Alignment:
| Q |
5 |
gtttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaat |
104 |
Q |
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||||| ||||| || ||| |||||||||||| ||||||||| |||||||| |||||||||| ||| ||||||||| | ||||||||| | |||||| ||| |
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| T |
2308306 |
gtttgcatattaagtctagacaaactccacctccatgaatttaccacaatctccgccaaaatatcttccacatgtattacctcattaaggaaaatcgaat |
2308207 |
T |
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| Q |
105 |
gattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaaccttt |
162 |
Q |
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| T |
2308206 |
ggttcctcgcttgccaaatagcccatatagttgcatgccaaatgatccacaaaccttt |
2308149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 520131 - 520215
Alignment:
| Q |
68 |
tcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatcc |
152 |
Q |
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| T |
520131 |
tcatccacagatttcacctcattccggaatataaaatgatttctcgcttgccaaattgaccaaatagttgcatcccaaataatcc |
520215 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 51091205 - 51091110
Alignment:
| Q |
65 |
agatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacct |
160 |
Q |
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| T |
51091205 |
agatcttccacatatttcacatcattccgaaaaataatgtgattcctaacttgccaaaggaccaaaatagttgcatgccaaatcatccataaacct |
51091110 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 41195215 - 41195261
Alignment:
| Q |
110 |
ctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa |
156 |
Q |
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| T |
41195215 |
ctcgcttgccaaataacccaaatagtagcatgccaaataatccacaa |
41195261 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 43805470 - 43805405
Alignment:
| Q |
97 |
aatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaaccttt |
162 |
Q |
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| T |
43805470 |
aatcaaatgatttctcacttgccagataccctaaagagttgcatgccaaataatccataaaccttt |
43805405 |
T |
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