View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_1D_low_11 (Length: 320)
Name: NF9873_1D_low_11
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 115 - 307
Target Start/End: Original strand, 15802304 - 15802496
Alignment:
| Q |
115 |
tggttttgaagttgcaaaggaccagtagagtttgcttcaatacaattgcttttaagaaaatgaagaaattgcgattgttgcaacttgataatgtacaagt |
214 |
Q |
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| T |
15802304 |
tggttttgaagtcgcaaaggaccagtagagtttgcttcaatacaattgctcttaagaaaatgaagaaattgcgattgttgcaacttgataatgtacaagt |
15802403 |
T |
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| Q |
215 |
cattggagattatgagtgtttttcgaagcagttgagatggctttcttggcaaggatttcctttaaaatacatgccagaaaacttttatcagaa |
307 |
Q |
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| T |
15802404 |
catcggagattatgagtgtttttcgaagcagttgagatggctttcttggcaaggatttcctttaaaatacatgccagaaaacttttatcagaa |
15802496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 115 - 307
Target Start/End: Original strand, 3314235 - 3314427
Alignment:
| Q |
115 |
tggttttgaagttgcaaaggaccagtagagtttgcttcaatacaattgcttttaagaaaatgaagaaattgcgattgttgcaacttgataatgtacaagt |
214 |
Q |
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| T |
3314235 |
tggttatgaagttgcaaaggtccagtagagttggtttcgatgcaatcggttttgagaaaatgaagagattgagattgttgcaacttgatcatgtacaagt |
3314334 |
T |
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| Q |
215 |
cattggagattatgagtgtttttcgaagcagttgagatggctttcttggcaaggatttcctttaaaatacatgccagaaaacttttatcagaa |
307 |
Q |
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| T |
3314335 |
cattggagactatgagtgtttttcaaaacacctgagttggctttcttggcaaggatttcctttaaaatacatgccagaaaacttttatcagaa |
3314427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 115 - 307
Target Start/End: Complemental strand, 3392338 - 3392146
Alignment:
| Q |
115 |
tggttttgaagttgcaaaggaccagtagagtttgcttcaatacaattgcttttaagaaaatgaagaaattgcgattgttgcaacttgataatgtacaagt |
214 |
Q |
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||||| ||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
3392338 |
tggttatgaagttgccaaagaccaatagagtttgctttgatacaattgcttttgagaaaatgaagagattgagattgttgcaacttgataatgtacaagt |
3392239 |
T |
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| Q |
215 |
cattggagattatgagtgtttttcgaagcagttgagatggctttcttggcaaggatttcctttaaaatacatgccagaaaacttttatcagaa |
307 |
Q |
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| T |
3392238 |
catcggagattacaagtgtttttcaaagcacctgagatggctttcttggcaaggatttccattaaaatacacaccagaaaacttttatcagaa |
3392146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 115 - 307
Target Start/End: Original strand, 3363546 - 3363738
Alignment:
| Q |
115 |
tggttttgaagttgcaaaggaccagtagagtttgcttcaatacaattgcttttaagaaaatgaagaaattgcgattgttgcaacttgataatgtacaagt |
214 |
Q |
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||||| ||||||||| || ||||| |||||||||||| |||||||||||||| ||||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
3363546 |
tggttatgaagttgccaaagaccaatagagtttgctttgatacaattgcttttgagaaaatgattagattgagattgttgcaacttgataatgtacaagt |
3363645 |
T |
|
| Q |
215 |
cattggagattatgagtgtttttcgaagcagttgagatggctttcttggcaaggatttcctttaaaatacatgccagaaaacttttatcagaa |
307 |
Q |
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||| |||||||| |||||||| | ||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
3363646 |
catcggagattacaagtgttttccaaagcatctgagatggctttcttggcaaggatttccattaaaatacaccccagaaaacttttatcagaa |
3363738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 28325157 - 28325044
Alignment:
| Q |
9 |
ttggaagtagttgcagattgtttttgaatagaagaggaataaagggtccannnnnnnctacggaatttgcgatatgagtagtgatttgaaaataggcgct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28325157 |
ttggaagtagttgcagattgtttttgaatagaagaggaataaagggtccatttttttctacggaatttgcgatatgagtagtgatttgaaaataagcgct |
28325058 |
T |
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| Q |
109 |
ttttcatggttttg |
122 |
Q |
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|||||||||||||| |
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| T |
28325057 |
ttttcatggttttg |
28325044 |
T |
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