View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_1D_low_12 (Length: 307)
Name: NF9873_1D_low_12
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 5 - 301
Target Start/End: Complemental strand, 35107884 - 35107588
Alignment:
| Q |
5 |
cataaccaacagagtctttctagttctggaagtatctgtcaccataaattttatagaagaattgtaatgaaacctgatgcagaaggttccgatgggtaag |
104 |
Q |
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| T |
35107884 |
cataaccaacagagtctttctagttctggaagcatctgtcaccataaattttatagaagaattgtaatgaaacctgatgcagaaggttccgatgggtaag |
35107785 |
T |
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| Q |
105 |
cataacactttttggatttccggttgttccacttgtgtatataagagtggcaatgtcatctgagttgattgcttcataaacataccgttgacctgcaatc |
204 |
Q |
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| T |
35107784 |
cataacaccttttggatttccagttgttccacttgtgtatataagagtggcaatgtcatctgagttgattgcttcataaacataccgttgacctgcaatc |
35107685 |
T |
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| Q |
205 |
aatgtagaaagtagctgggtagaaaagtagcaaagcactgattactgcttctttagatgattaggagaaatattgtcttgaagaaatggaaacacca |
301 |
Q |
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| T |
35107684 |
aatgtagaaagtagctgggtagaaaagtagcaaagcactgattactgcttctttagatgattaggagaaatattgtcttgaagaaatggaaacacca |
35107588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 38133557 - 38133663
Alignment:
| Q |
74 |
aaacctgatgcagaaggttccgatgggtaagcataacactttttggatttccggttgttccacttgtgtatataagagtggcaatgtcatctgagttgat |
173 |
Q |
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| T |
38133557 |
aaacctgatgcaaaagattctgatgggttagcataacaccttttggatttccagtagtaccacttgtgtatacaagagtagcaatgtcatcagattttat |
38133656 |
T |
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| Q |
174 |
tgcttca |
180 |
Q |
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| T |
38133657 |
tgcttca |
38133663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 38121466 - 38121556
Alignment:
| Q |
74 |
aaacctgatgcagaaggttccgatgggtaagcataacactttttggatttccggttgttccacttgtgtatataagagtggcaatgtcatc |
164 |
Q |
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|||||||||||| ||| ||| ||||||| |||||||||| ||| |||||||| || || ||||||||||| | |||||| ||||||||||| |
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| T |
38121466 |
aaacctgatgcaaaagattctgatgggttagcataacacctttaggatttccagtagtaccacttgtgtacacaagagtagcaatgtcatc |
38121556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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