View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_1D_low_15 (Length: 298)
Name: NF9873_1D_low_15
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 293
Target Start/End: Complemental strand, 34262627 - 34262340
Alignment:
| Q |
6 |
gtttggagttgttatcatgttgtccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
34262627 |
gtttggagttgttatcatgttgtccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcggcaagagaagaaa |
34262528 |
T |
|
| Q |
106 |
gaaatagctctatgtgataccatgaatcaagaaaaaacataaaatgttttcttgtaagaggcgttcattttcattcaaaccaattagttctaaggttgta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34262527 |
gaaatagctctatgtgataccatgaatcaagaaaaaacataaaatgttttcttgtaagaggcgttcattttcattcaaaccaattagttctaaggttgta |
34262428 |
T |
|
| Q |
206 |
gnnnnnnnnnnncttggttaaatttagtagtgttcaatcaatgtacttttttcttgtcaagtatggttaataatgatacattttaagt |
293 |
Q |
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| T |
34262427 |
gtttttttttttcttggttaaatttagtagtgttcaatcaatgtacttttttcttgtcaagtatggttaataatgatacattttaagt |
34262340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 35621548 - 35621419
Alignment:
| Q |
6 |
gtttggagttgttatcatgttgtccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaa |
105 |
Q |
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||||||||||||||| ||||| |||||||| | || || | |||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
35621548 |
gtttggagttgttataatgttatccaatttaattttcttctatttgcctgagactaaagggattgttctttgtgatacaatggatcaacaagagaagaaa |
35621449 |
T |
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| Q |
106 |
gaaatagctctatgtgataccatgaatcaa |
135 |
Q |
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| T |
35621448 |
gaattagctatatatgatgccatgaatcaa |
35621419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 25 - 290
Target Start/End: Complemental strand, 37576542 - 37576287
Alignment:
| Q |
25 |
ttgtccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaagaaatagctctatgtgata |
124 |
Q |
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|||||||||||||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37576542 |
ttgtccaatttcacattgctgtgtttgccagagactgaa-------ttctttgtggtacaatggatcagcaagagaagaaagaaatagctctatgtgata |
37576450 |
T |
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| Q |
125 |
ccatgaatcaagaaaaaacataaaatgttttcttgtaagaggc-gttcattttcattcaaaccaattagttctaaggttgtagnnnnnnnnnnncttggt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
37576449 |
ccatgaatcaagaaaaaacataaaatgttttcttgtaagaggcagttcattttcattcaaaccaattagttc-aaggttgtagttattttttttcttggt |
37576351 |
T |
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| Q |
224 |
taaatttagtagtgttcaatcaatgtacttttttcttgtcaagtatggttaataatgatacatttta |
290 |
Q |
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| T |
37576350 |
taaatt---tagtgttcaatcaatgtacttttttcttgtcaagtatggttaataatgatacatttta |
37576287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 37602445 - 37602341
Alignment:
| Q |
7 |
tttggagttgttatcatgttgtccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaag |
106 |
Q |
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|||||||||| ||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| || || |
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| T |
37602445 |
tttggagttgctatcatgttgtccaactttacattgttgtgtttgccagagactaaagggattgttctttgtgatacaatggatcaacaagagaggagag |
37602346 |
T |
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| Q |
107 |
aaata |
111 |
Q |
| |
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||||| |
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| T |
37602345 |
aaata |
37602341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 37602245 - 37602181
Alignment:
| Q |
222 |
gttaaatttagtagtgttcaatcaatgtacttttttcttgtcaagtatggttaataatgatacatttta |
290 |
Q |
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||||||||||||||||||||| ||| |||||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
37602245 |
gttaaatttagtagtgttcaa--aatatacttttt-cttgt-aagtagggttaataatgatacatttta |
37602181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 14544168 - 14544293
Alignment:
| Q |
6 |
gtttggagttgttatcatgttgtccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaa |
105 |
Q |
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||||||||||||||| |||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||| || ||||||||| |
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| T |
14544168 |
gtttggagttgttataatgttgtccaattttacattgttctttttgccagagactatagggattgttctttgtgatacaatggatcaacaagagaagaaa |
14544267 |
T |
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| Q |
106 |
gaaatagctctatgtgataccatgaa |
131 |
Q |
| |
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||||||||| | |||||| ||||||| |
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| T |
14544268 |
gaaatagctttgtgtgatgccatgaa |
14544293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 14579419 - 14579288
Alignment:
| Q |
6 |
gtttggagttgttatcatgttgtccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaa |
105 |
Q |
| |
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||||||||||||||| |||||||||||||| |||||||| | |||||| ||||| || |||||||||||||||||||||||||| || ||||||||| |
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| T |
14579419 |
gtttggagttgttataatgttgtccaattttacattgttctttttgccggagactatgggaattgttctttgtgatacaatggatcaacaagagaagaaa |
14579320 |
T |
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| Q |
106 |
gaaatagctctatgtgataccatgaatcaaga |
137 |
Q |
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||||||||| | | |||| ||||||||||||| |
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| T |
14579319 |
gaaatagctatgtctgatgccatgaatcaaga |
14579288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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