View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_1D_low_20 (Length: 260)
Name: NF9873_1D_low_20
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 9070432 - 9070210
Alignment:
| Q |
30 |
atacgtaatggatcgcttgaacatgggttctagctttagagtaacctacatattcaagtgattagaaatcatcataattaagactttttacatgataacg |
129 |
Q |
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| T |
9070432 |
atacgtaatggatcgcttgaatatgggttctagctttagagtaacctacatattcaagtgattataaatcatcataattaagcctttttacatgataacg |
9070333 |
T |
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| Q |
130 |
aacatgaaagaaaataatttttagttagtcacgtattaaaataaattatacaagagtttatacaacttcaactaaattttaccccaccaaataaacttag |
229 |
Q |
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| T |
9070332 |
aacatgaaagaaaataaattttagtttgtcatgtattaaaataaagtatacaagagtttatacaacttcaactaaattttaccccaccaaataaacttag |
9070233 |
T |
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| Q |
230 |
gtatatggatcaaacaacttcat |
252 |
Q |
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|||||||||||||||||| |||| |
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| T |
9070232 |
gtatatggatcaaacaacgtcat |
9070210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 24571065 - 24571130
Alignment:
| Q |
37 |
atggatcgcttgaacatgggttctagctttagagtaacctacatattcaagtgattagaaatcatc |
102 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||| |
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| T |
24571065 |
atggatcgcttgaacatcggttctagttttagagtaacctacaaattcaagtgattaccaatcatc |
24571130 |
T |
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