View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_1D_low_23 (Length: 245)

Name: NF9873_1D_low_23
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_1D_low_23
NF9873_1D_low_23
[»] chr1 (23 HSPs)
chr1 (39-245)||(51545596-51545803)
chr1 (39-239)||(43869576-43869773)
chr1 (39-239)||(23172433-23172633)
chr1 (63-231)||(35479055-35479222)
chr1 (74-227)||(6576051-6576203)
chr1 (74-231)||(33682383-33682540)
chr1 (39-231)||(31802496-31802691)
chr1 (39-231)||(46637871-46638066)
chr1 (86-231)||(47264851-47264996)
chr1 (39-206)||(42559458-42559624)
chr1 (41-128)||(34777771-34777858)
chr1 (41-201)||(2869994-2870154)
chr1 (41-201)||(3013021-3013181)
chr1 (41-153)||(4855576-4855688)
chr1 (41-156)||(33600765-33600880)
chr1 (58-204)||(35009254-35009401)
chr1 (41-128)||(45046124-45046211)
chr1 (62-204)||(46583147-46583289)
chr1 (175-236)||(3370714-3370774)
chr1 (74-226)||(42135190-42135345)
chr1 (41-201)||(51895734-51895894)
chr1 (42-155)||(52643241-52643354)
chr1 (56-128)||(15104864-15104936)
[»] chr8 (25 HSPs)
chr8 (39-245)||(37802927-37803133)
chr8 (39-245)||(15143565-15143771)
chr8 (39-226)||(10268768-10268955)
chr8 (39-226)||(11032079-11032266)
chr8 (39-226)||(17808037-17808224)
chr8 (63-231)||(32823235-32823402)
chr8 (71-206)||(11720920-11721055)
chr8 (39-222)||(11788709-11788889)
chr8 (39-231)||(33749449-33749644)
chr8 (39-204)||(31822274-31822442)
chr8 (60-235)||(38884198-38884373)
chr8 (41-201)||(42942189-42942349)
chr8 (41-204)||(41042150-41042313)
chr8 (40-110)||(9185873-9185943)
chr8 (41-204)||(9672735-9672898)
chr8 (41-204)||(33708376-33708539)
chr8 (41-204)||(40339246-40339409)
chr8 (41-204)||(5036854-5037017)
chr8 (62-200)||(26239977-26240115)
chr8 (41-126)||(8609442-8609527)
chr8 (41-125)||(13282800-13282884)
chr8 (41-125)||(38547630-38547714)
chr8 (143-198)||(9185940-9185995)
chr8 (41-105)||(13108012-13108076)
chr8 (45-201)||(22272680-22272836)
[»] chr7 (25 HSPs)
chr7 (39-245)||(23965363-23965569)
chr7 (39-245)||(31914347-31914553)
chr7 (39-239)||(6057739-6057936)
chr7 (39-238)||(17199876-17200074)
chr7 (39-239)||(25972308-25972508)
chr7 (39-235)||(48456808-48457004)
chr7 (39-226)||(367098-367284)
chr7 (39-235)||(13035079-13035275)
chr7 (63-231)||(46811691-46811859)
chr7 (41-204)||(23905818-23905981)
chr7 (39-231)||(46995768-46995963)
chr7 (41-204)||(30939975-30940138)
chr7 (39-114)||(46867025-46867100)
chr7 (41-201)||(37115089-37115249)
chr7 (41-204)||(29996060-29996223)
chr7 (41-232)||(48851864-48852055)
chr7 (69-231)||(7402300-7402462)
chr7 (41-122)||(47385851-47385932)
chr7 (41-128)||(35692992-35693079)
chr7 (62-204)||(46439076-46439218)
chr7 (74-231)||(47340947-47341107)
chr7 (40-125)||(12903280-12903365)
chr7 (60-105)||(32839868-32839913)
chr7 (84-204)||(6603985-6604105)
chr7 (41-125)||(27665690-27665774)
[»] scaffold0129 (1 HSPs)
scaffold0129 (39-243)||(5336-5540)
[»] chr2 (20 HSPs)
chr2 (39-245)||(39282134-39282322)
chr2 (39-245)||(860598-860794)
chr2 (39-245)||(15806728-15806916)
chr2 (98-245)||(32607796-32607943)
chr2 (39-238)||(14000760-14000959)
chr2 (39-235)||(40098540-40098736)
chr2 (40-236)||(4415770-4415966)
chr2 (39-227)||(42002386-42002574)
chr2 (41-232)||(40151283-40151474)
chr2 (39-231)||(91413-91608)
chr2 (56-236)||(4046701-4046880)
chr2 (74-231)||(29908757-29908917)
chr2 (49-203)||(36414-36571)
chr2 (41-156)||(17696621-17696736)
chr2 (185-245)||(62506-62566)
chr2 (56-236)||(26584339-26584523)
chr2 (41-204)||(42518800-42518963)
chr2 (41-103)||(2767349-2767411)
chr2 (41-127)||(40560638-40560724)
chr2 (41-125)||(44709402-44709486)
[»] chr4 (20 HSPs)
chr4 (39-243)||(37478512-37478698)
chr4 (39-239)||(50132368-50132568)
chr4 (39-239)||(27383018-27383218)
chr4 (45-235)||(9590862-9591052)
chr4 (47-239)||(44973374-44973566)
chr4 (63-231)||(44557585-44557752)
chr4 (56-204)||(41761293-41761440)
chr4 (74-226)||(2349675-2349830)
chr4 (86-231)||(10767170-10767315)
chr4 (74-231)||(27625675-27625830)
chr4 (41-231)||(10371781-10371974)
chr4 (41-180)||(35403250-35403389)
chr4 (41-204)||(49523529-49523692)
chr4 (154-226)||(4614013-4614085)
chr4 (56-156)||(41781932-41782032)
chr4 (39-199)||(7149951-7150111)
chr4 (56-128)||(52867801-52867873)
chr4 (41-128)||(51012330-51012417)
chr4 (42-203)||(48646304-48646465)
chr4 (143-226)||(35996850-35996936)
[»] chr3 (26 HSPs)
chr3 (39-239)||(5133964-5134161)
chr3 (39-239)||(5126709-5126906)
chr3 (39-245)||(54093458-54093664)
chr3 (47-239)||(41624629-41624821)
chr3 (39-235)||(7589837-7590033)
chr3 (56-236)||(22219645-22219825)
chr3 (48-231)||(31886508-31886694)
chr3 (74-227)||(1846433-1846587)
chr3 (42-203)||(51685016-51685177)
chr3 (41-204)||(17515725-17515888)
chr3 (145-235)||(17260316-17260406)
chr3 (41-153)||(35905340-35905452)
chr3 (42-203)||(48830383-48830544)
chr3 (56-156)||(610030-610130)
chr3 (41-204)||(21349109-21349272)
chr3 (45-128)||(54898845-54898928)
chr3 (62-155)||(42279932-42280025)
chr3 (74-226)||(45256486-45256641)
chr3 (57-153)||(2225781-2225877)
chr3 (41-153)||(7884501-7884613)
chr3 (41-153)||(41978152-41978264)
chr3 (41-204)||(46198135-46198298)
chr3 (60-116)||(17260237-17260294)
chr3 (41-202)||(44794622-44794783)
chr3 (41-125)||(2660628-2660712)
chr3 (56-204)||(44275782-44275930)
[»] chr6 (11 HSPs)
chr6 (39-245)||(11164634-11164822)
chr6 (47-245)||(25170855-25171052)
chr6 (41-235)||(31209652-31209846)
chr6 (39-231)||(30640441-30640633)
chr6 (39-231)||(4645377-4645572)
chr6 (41-204)||(7372526-7372689)
chr6 (39-231)||(29113944-29114136)
chr6 (41-204)||(20523781-20523944)
chr6 (56-165)||(6899904-6900013)
chr6 (42-127)||(7050163-7050248)
chr6 (45-105)||(9399067-9399127)
[»] scaffold0092 (1 HSPs)
scaffold0092 (41-245)||(35209-35395)
[»] scaffold0204 (1 HSPs)
scaffold0204 (39-245)||(28929-29124)
[»] chr5 (15 HSPs)
chr5 (46-231)||(15457968-15458152)
chr5 (39-205)||(9221237-9221402)
chr5 (60-226)||(25510124-25510285)
chr5 (39-236)||(27076190-27076387)
chr5 (39-231)||(32088724-32088919)
chr5 (41-204)||(2853875-2854038)
chr5 (39-231)||(18727669-18727863)
chr5 (41-128)||(7268247-7268334)
chr5 (102-234)||(19997579-19997712)
chr5 (45-153)||(17574726-17574834)
chr5 (39-121)||(6116122-6116204)
chr5 (41-204)||(12737524-12737686)
chr5 (41-204)||(12800347-12800509)
chr5 (41-204)||(24540757-24540920)
chr5 (39-109)||(35399518-35399588)
[»] scaffold0004 (1 HSPs)
scaffold0004 (41-128)||(108219-108306)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 51545596 - 51545803
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  51545596 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccggtgaggggtcctgcaccatcacatccaattgctcctgacgttgttcg 51545695  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggc-tttccaaagaagtgaagcttgatgca 237  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || | ||||||| ||| ||||||||||||||    
T  51545696 agtgccatatccaaattatggtccatctggttcaagtcaacctaagttcatggagtttatcccaacccccgacttttccaatgaactgaagcttgatgca 51545795  T
Q  238 tgcttaga 245  Q
    ||||||||    
T  51545796 tgcttaga 51545803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 43869576 - 43869773
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    ||||||||||||||||  || |||||||||||||||||||||| ||||||||| |||||| |||||||||| |||  ||||||||||||| |||| || |    
T  43869576 ggtatggcattagagggtcaattatttcaaatgagaggcctaaacaaacaccaatgaggg-tcctgcaccaacac--ccaactgctcctggcgttattag 43869672  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    ||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  43869673 agtaccatatccaaattatggtccattctgttcaactcaacctaagttcatggagtttatcccaactctcggctttccaaagaagtgatacttgatgcat 43869772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 23172433 - 23172633
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| |||||||||  || ||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| | |||| || |    
T  23172433 ggtatgacattagagggtcaattatttcaaatgagaggcctacgcaaaaaccagtgaggggtcctgcaccaacacatccaactgctccaggcgttattag 23172532  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    ||| |||||||||||||||| |||||||||| | | ||||||||||||| |||||||||||||||||| ||  ||| |||||||||||  ||||||||||    
T  23172533 agtaccatatccaaattatgatccatccggtccgactcaacctaagttcgtggagtttatcccaacccccgaattttcaaagaagtgatacttgatgcat 23172632  T
Q  239 g 239  Q
    |    
T  23172633 g 23172633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 35479222 - 35479055
Alignment:
Q  63 tttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtcc 162  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||   ||||||||| |||||| | |  || |||| ||||||||||  ||||||||    
T  35479222 tttcagatgataggcctaagcaaacaccaatgaggggtcctgcaccaggtcatccaactcctcctggcataattagagttccatatccaacctatggtcc 35479123  T
Q  163 atccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
    | ||||||||| ||||||| | ||||||||||||||  |||||| | | ||||||||||||||||||||    
T  35479122 acccggttcaaatcaacctcaattcatggagtttat-acaacccccagatttccaaagaagtgaagctt 35479055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 6576051 - 6576203
Alignment:
Q  74 aggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaa 173  Q
    |||||||||||||||||| |||||||||||||||||   ||||||||| ||| || | |  || |||| ||||||||||  ||||||||| |||||||||    
T  6576051 aggcctaagcaaacaccaatgaggggtcctgcaccaggtcatccaactcctcatggcataattagagttccatatccaacctatggtccacccggttcaa 6576150  T
Q  174 gtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaa 227  Q
     ||||||| | ||||||||||||||  |||||| ||| ||| ||||||||||||    
T  6576151 atcaacctcaattcatggagtttat-acaacccccggattttcaaagaagtgaa 6576203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 33682540 - 33682383
Alignment:
Q  74 aggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaa 173  Q
    |||||||||||||||||| ||||||||||| ||||| |  |||||||| |||||| | |  || |||| ||||||||||  ||||||||| ||||||  |    
T  33682540 aggcctaagcaaacaccaatgaggggtcctacaccaactaatccaactcctcctgccataattagagttccatatccaacctatggtccacccggttaga 33682441  T
Q  174 gtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     ||||||| | |||||||||||||| ||||||| ||| ||| ||||||||| ||||||    
T  33682440 atcaacctcaattcatggagtttataccaacccccggattttcaaagaagtaaagctt 33682383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 231
Target Start/End: Original strand, 31802496 - 31802691
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||| ||||||| ||| || |||||  ||| ||||||| |||||||||| ||||||||||||||||| | |||||||||  | ||| | |  || |    
T  31802496 ggtatggccttagaggaccaattctttcagttgataggcctaggcaaacaccaatgaggggtcctgcaccagctcatccaactcgtgctggcataattag 31802595  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaac---ctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     || ||||||||||  ||||||||||||||||| | |||||   |||| ||||||||||||||  ||||   ||| ||||||||||||||| ||||    
T  31802596 ggttccatatccaacctatggtccatccggttcgactcaacctactaaattcatggagtttatatcaactaccggatttccaaagaagtgatgctt 31802691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 46638066 - 46637871
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| | ||||||| ||| || |||||  ||| ||||||| ||||||| || ||||||||||||||||| | ||||||||| || ||| | |  || |    
T  46638066 ggtatgaccttagaggaccaattctttcagttgataggcctaggcaaacatcaatgaggggtcctgcaccagctcatccaactcctgctggcataattag 46637967  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaac---ctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     || ||||||||||  ||||||||||||||||| | |||||   |||| |||||||||||||| |||||   ||| ||||||||||||||| ||||    
T  46637966 ggttccatatccaacctatggtccatccggttcgactcaacctactaaattcatggagtttataccaactaccggatttccaaagaagtgatgctt 46637871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 47264996 - 47264851
Alignment:
Q  86 acaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaagtcaacctaagt 185  Q
    |||||| ||||||||||||||||| | ||||||||| || ||| | |  || | || ||||||||||  ||||||||| ||||||| | ||||||| | |    
T  47264996 acaccaatgaggggtcctgcaccagctcatccaactcctgctggcatgattagggttccatatccaacctatggtccacccggttcgactcaacctcaat 47264897  T
Q  186 tcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
    ||||||||||||| ||||| | ||| ||||| ||||||||| ||||    
T  47264896 tcatggagtttataccaactcccggatttcccaagaagtgatgctt 47264851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 42559624 - 42559458
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||| ||||| ||||||||||||| | | ||  |||||||| ||||| |||||| |||||| ||| |||||| |||||||| ||  ||| ||||    
T  42559624 ggtatggcatgagaggaccagttatttcaactaaaagttctaagcaagcaccaatgaggg-tcctgctccaccacatctaactgctcttggagttattcg 42559526  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccc 206  Q
    |||  ||||| ||| ||||||  |||||| ||| | ||||||  | |||||| |||||||||||||||    
T  42559525 agtaacatattcaagttatgggtcatccgattctactcaaccccaattcatgtagtttatcccaaccc 42559458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 34777858 - 34777771
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctg 128  Q
    |||||||| ||||| ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||||||    
T  34777858 tatggcatgagaggaccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctg 34777771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 2869994 - 2870154
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||| | ||||||||||| | || ||| ||||||||| |||||||| ||||  ||  | |||||||||||||||  ||| || |||    
T  2869994 tatggcatgagaggaccaatgatttcaaatgacatgcataaacaaacaccattgaggggttctgcttcacaagatccaactgctcctggagttattagag 2870093  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatccc 201  Q
    | | | |||||||||| ||  |||||||||| | ||||||  | | |||||||||||||||    
T  2870094 ttcaaaatccaaattacgggtcatccggttctactcaaccccaatacatggagtttatccc 2870154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 3013181 - 3013021
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||||| ||||||||||  | || ||| ||||||||| ||||||||| ||| |||  | || ||| ||||||||  ||| || |||    
T  3013181 tatggcatgagaggaccagtgatttcaaatggcatgcataaacaaacaccactgaggggtcttgctccacaaaattcaattgctcctggagttattagag 3013082  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatccc 201  Q
    | ||| |||||||||| || ||||||| ||| | ||||||  | | |||||||||||||||    
T  3013081 ttccaaatccaaattacgggccatccgcttctactcaaccccaatacatggagtttatccc 3013021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 4855688 - 4855576
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| || || ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||||||  ||| || |||    
T  4855688 tatggcatgagaggacccgtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctggagttattagag 4855589  T
Q  141 tgccatatccaaa 153  Q
    | ||| |||||||    
T  4855588 ttccaaatccaaa 4855576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 33600880 - 33600765
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||||| ||||||||||| | || ||| ||||||||| | ||||||||||| |||  | ||||||||||||| |  ||| || |||    
T  33600880 tatggcatgagaggaccagtgatttcaaatgacatgcataaacaaacaccaataaggggtcctgctccacaaaatccaactgctccgggagttattagag 33600781  T
Q  141 tgccatatccaaatta 156  Q
    | ||| ||||||||||    
T  33600780 ttccaaatccaaatta 33600765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 35009254 - 35009401
Alignment:
Q  58 agttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattat 157  Q
    ||||||||||| |||| | ||| |||||||  ||||||| |||| ||| |||  | |||||||||||  ||  |||||| |||| |||||||||||||||    
T  35009254 agttatttcaactgagtgacctgagcaaacgtcagtgagaggtcatgctccacaaaatccaactgcttttggagttgttagagtaccatatccaaattat 35009353  T
Q  158 ggtccatccggttcaagtcaaccta-agttcatggagtttatcccaac 204  Q
    ||   ||||||||  | |||||| | | ||||||||||||||||||||    
T  35009354 gggaaatccggttttactcaacccagaattcatggagtttatcccaac 35009401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 45046211 - 45046124
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctg 128  Q
    |||||||| ||||| ||| | ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||||||    
T  45046211 tatggcatgagaggaccaatgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctg 45046124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 46583289 - 46583147
Alignment:
Q  62 atttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtc 161  Q
    |||| |||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||| ||  ||| || |||| ||| |||||||||| ||      
T  46583289 attttaaatgacatgcataaacaaacaccactgaggggtcctgctccacaagatccaactgctcttggagttattagagttccaaatccaaattacgggt 46583190  T
Q  162 catccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    |||||| ||| | ||||||  | | ||||||||||||||||||    
T  46583189 catccgtttctactcaaccccaatacatggagtttatcccaac 46583147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 3370774 - 3370714
Alignment:
Q  175 tcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgc 236  Q
    ||||||||| |||||| |||||||| ||||||| || ||||||||||||||| |||||||||    
T  3370774 tcaacctaa-ttcatgaagtttatctcaaccctaggatttccaaagaagtgatgcttgatgc 3370714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 226
Target Start/End: Original strand, 42135190 - 42135345
Alignment:
Q  74 aggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaa 173  Q
    ||||||||||| |||||| |||||||| |||||| | |  |||||||| || ||| | |  || | || ||||||||||  ||||||||| ||||||| |    
T  42135190 aggcctaagcagacaccaatgaggggttctgcactagcttatccaacttctgctggcatgattagggttccatatccaacctatggtccacccggttcga 42135289  T
Q  174 gtcaac---ctaagttcatggagtttatcccaaccctcggctttccaaagaagtga 226  Q
     |||||   |||| |||||||||||||| ||||| | ||  |||||||||||||||    
T  42135290 ctcaacatactaaattcatggagtttataccaactcccgaatttccaaagaagtga 42135345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 51895894 - 51895734
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||||| ||||| ||||  | || ||| ||||||||| ||||||||||||| |||  | ||||||||| | |||  ||| || |||    
T  51895894 tatggcatgagaggaccagtgatttcgaatggcatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgtttctggagttattagag 51895795  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatccc 201  Q
    | | | |||||||||||||  |||||| ||| | ||||||  | | |||||||||||||||    
T  51895794 ttcaaaatccaaattatgggtcatccgcttctactcaaccataatacatggagtttatccc 51895734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 52643354 - 52643241
Alignment:
Q  42 atggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagt 141  Q
    ||||||| ||||  ||||| ||||| ||||| | || ||| ||||||||| ||||||||||||| |||  | ||| |||||||||||  ||| || ||||    
T  52643354 atggcatgagagaaccagtgatttcgaatgacaagcataaacaaacaccactgaggggtcctgctccacaaaatctaactgctcctggagttattagagt 52643255  T
Q  142 gccatatccaaatt 155  Q
     ||| |||||||||    
T  52643254 tccaaatccaaatt 52643241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 15104864 - 15104936
Alignment:
Q  56 ccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctg 128  Q
    ||||| ||||||||||| |||| ||| ||||||||| ||||||||| ||| |||  | || ||||||||||||    
T  15104864 ccagtgatttcaaatgacaggcataaacaaacaccactgaggggtcatgctccacaaaattcaactgctcctg 15104936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 37802927 - 37803133
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  37802927 ggtatgacattagaggtccaattatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcatcatcacatccaattgctcctgacgttgttcg 37803026  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |  ||||||||| || |||||||||||||||    
T  37803027 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatctcaacccccaactttccaaataactgaagcttgatgcat 37803126  T
Q  239 gcttaga 245  Q
    |||||||    
T  37803127 gcttaga 37803133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 39 - 245
Target Start/End: Complemental strand, 15143771 - 15143565
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||||| ||  ||  |||||||||| |||| |||||| ||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||    
T  15143771 ggtatggcattaaagtgcctattatttcaaaagagatgcctaatcaaacaccattaaggggtcctgcaccatcacatccaactgctcctggcgttattcg 15143672  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  15143671 agtgccatatccagattatggtccatccggttcaagtcaacctaagttcatagagtttatcccaacccccggctttccaaagaagtgaagtttgatgcat 15143572  T
Q  239 gcttaga 245  Q
    |||||||    
T  15143571 gcttaga 15143565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 39 - 226
Target Start/End: Original strand, 10268768 - 10268955
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| ||||||||| ||  |||||| ||||||||| |||||| |||||||||||||||||| ||||||| |||||||||||||| ||| |||| || |    
T  10268768 ggtatgacattagaggacctattattttaaatgagagacctaagaaaacaccagtgaggggtcatgcaccagcacatccaactgcttctgccgttattag 10268867  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtga 226  Q
    ||| |||||||||| |||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  10268868 agtaccatatccaagttatggtccatctggttcgactcaacctaaattcatggagtttatcccaaccctcggatttccaaagaagtga 10268955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 11032266 - 11032079
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| ||||||||| ||  |||||||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||| ||| |||| || |    
T  11032266 ggtatgacattagaggacctattatttcaaatgagaggcctaaacaaacaccagttaggggtcctacaccagcacatccaactgcttctgccgttattag 11032167  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtga 226  Q
    ||| |||||||||| |||||| ||||| ||| | | ||||||||| |||||||||||||| ||||||||||| |||||||||||||||    
T  11032166 agtaccatatccaagttatggaccatctggtccgactcaacctaaattcatggagtttattccaaccctcggatttccaaagaagtga 11032079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 17808224 - 17808037
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| ||| ||||| ||||||||||||| | ||| | ||  |||||||  ||||||||||||||| ||| ||| ||||||||||| ||  ||| || |    
T  17808224 ggtatgacatgagaggaccagttatttcaactaagaagtctgcgcaaacaagagtgaggggtcctgctccaccacttccaactgctcttggagttattag 17808125  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtga 226  Q
    | |||||||| ||| |||||| ||||||||||| | ||||||  | ||||||||||||||||||||||  || |||||||||||||||    
T  17808124 aatgccatattcaagttatggaccatccggttctactcaaccctaattcatggagtttatcccaaccccaggatttccaaagaagtga 17808037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 32823235 - 32823402
Alignment:
Q  63 tttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtcc 162  Q
    ||||| |||| ||||||||| |||||||| |||||||||||||||||   ||||||||| |||||| | |  || |||| |||||| |||  ||||||||    
T  32823235 tttcagatgataggcctaagtaaacaccaatgaggggtcctgcaccaggtcatccaactcctcctggcataattagagttccatattcaacctatggtcc 32823334  T
Q  163 atccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
    | ||||||| | ||||||| | ||||||||||||||  |||||| ||| ||||||||||||||||||||    
T  32823335 acccggttcgaatcaacctcaattcatggagtttat-acaacccccggatttccaaagaagtgaagctt 32823402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 11721055 - 11720920
Alignment:
Q  71 gagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggtt 170  Q
    ||||||||||| ||||||||||| | ||||||||| |||  | |||||||||||||||| ||| || |||| |||||||||| || ||| | ||||||||    
T  11721055 gagaggcctaaccaaacaccagttatgggtcctgctccacaaaatccaactgctcctgaagttattagagtaccatatccaagttttggacaatccggtt 11720956  T
Q  171 caagtcaacctaagttcatggagtttatcccaaccc 206  Q
    | | | ||||||| ||||||||||||||||||||||    
T  11720955 ctactaaacctaaattcatggagtttatcccaaccc 11720920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 11788709 - 11788889
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||| |||||   ||||||||||| ||| ||||||| |||| ||||| ||||||||||||| |||| | |||||||||||||||  ||| || |    
T  11788709 ggtatggcatgagagg---agttatttcaactgaaaggcctaggcaagcaccaatgaggggtcctgctccataaaatccaactgctcctggagttattag 11788805  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaa 222  Q
    ||| ||||||| || |||||| | ||||||||| | ||||||  | || |||| ||||||| ||||||  || |||||||||||    
T  11788806 agtaccatatcaaagttatgggcaatccggttctattcaaccccaattgatggcgtttatcacaaccccaggatttccaaagaa 11788889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 33749644 - 33749449
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||| ||||||| ||| || |||||  ||| ||||||  |||||||||| ||||||||||||||||| | ||||||||| || ||| | |  || |    
T  33749644 ggtatggccttagaggaccaattctttcagttgataggccttggcaaacaccaatgaggggtcctgcaccagctcatccaactcctgctggcataattag 33749545  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaac---ctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     || ||||||||||  ||||||||||||||||| | |||||   |||| |||||||||||||| |||||   ||| ||||||||||||||| ||||    
T  33749544 ggttccatatccaacctatggtccatccggttcgactcaacctactaaattcatggagtttataccaactaccggatttccaaagaagtgatgctt 33749449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 31822274 - 31822442
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||| ||||||| |||||| |||||  ||| |||||||||||||||||| ||||||||||||||||| | |||| |||| || ||| | |  || |    
T  31822274 ggtatggccttagaggaccagttctttcagttgataggcctaagcaaacaccaatgaggggtcctgcaccagctcatctaactcctgctggcataattag 31822373  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaac---ctaagttcatggagtttatcccaac 204  Q
     || ||||||||||  ||||||||||||||||| |  ||||   |||| |||||||||||||| |||||    
T  31822374 ggttccatatccaacctatggtccatccggttcgacccaacctactaaattcatggagtttataccaac 31822442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 38884198 - 38884373
Alignment:
Q  60 ttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatgg 159  Q
    ||||||||||||| || ||||||||||||||| |||||| |||| ||| | |||||| ||||| |  |  |||| || ||||  ||||||||| ||||||    
T  38884198 ttatttcaaatgatagacctaagcaaacaccactgagggatcctccactagcacatctaactgttgttagcgttattagagtatcatatccaagttatgg 38884297  T
Q  160 tccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatg 235  Q
    || ||||||||| | ||||||||| || ||  |||||||| ||| ||  |  ||||||||||||||| ||||||||    
T  38884298 tctatccggttcgattcaacctaaatttatatagtttatctcaatccctgaatttccaaagaagtgatgcttgatg 38884373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 42942189 - 42942349
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||||| ||||||||||  | || ||| ||||||||| ||||||||||||| |||  | |||||||||||||||  ||| || |||    
T  42942189 tatggcatgagaggaccagtaatttcaaatggcatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctggagttattagag 42942288  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatccc 201  Q
    | ||| || ||||||| || ||||||| ||| | |||| || | | |||||||||||||||    
T  42942289 ttccaaattcaaattacgggccatccgcttctactcaatctcaatacatggagtttatccc 42942349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 41042313 - 41042150
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||||| ||||||||||| | || ||| ||||||||| ||||||||| ||| |||  | ||||||||||| | |  ||| || |||    
T  41042313 tatggcatgagaggaccagtgatttcaaatgatatgcataaacaaacaccactgaggggtcatgctccacaaaatccaactgcttccggagttattagag 41042214  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| ||||||||||| |  |||||| ||| | ||||||| | | ||||||||||||||||||    
T  41042213 ttccaaatccaaattataggtcatccgcttctactcaacctcaatacatggagtttatcccaac 41042150  T

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Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 9185873 - 9185943
Alignment:
Q  40 gtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccat 110  Q
    ||||| ||||||||  ||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  9185873 gtatgacattagagaaccaattatttcaaatgagaggccaaagcaaacaacagtgaggggtcctgtaccat 9185943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 9672898 - 9672735
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||| | ||||| ||||||||||| |||| ||| ||||||||| ||||||||||||| |||  | |||||| |||||||   ||| || |||    
T  9672898 tatggcatgagatgaccagtgatttcaaatgacaggcataaacaaacaccactgaggggtcctgctccacaaaatccaattgctcctagagttattagag 9672799  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| ||  |||||| ||| |  |||||| | | |||||||||||| |||||    
T  9672798 ttccaaatccaaattacgggtcatccgcttctacacaacctcaatacatggagtttattccaac 9672735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 33708539 - 33708376
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||| | ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||| ||  ||| || ||     
T  33708539 tatggcatgagaggaccaatgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccactagatccaactgctcttggagttattagaa 33708440  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| ||  |||||| ||| | ||||||  | | ||||||||||||||||||    
T  33708439 ttccaaatccaaattacggatcatccgcttctactcaaccccaatacatggagtttatcccaac 33708376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 40339409 - 40339246
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||||| ||||||||||| | || ||| ||||||||| |||||| || ||| |||  | ||||||||| |||||  ||| || |||    
T  40339409 tatggcatgagaggaccagtgatttcaaatgacatgcataaacaaacaccactgagggatcttgctccacaaaatccaactggtcctggagttattagag 40339310  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    |  || |||||||||| ||  |||||| ||||| ||||||  | | ||||||||||||||||||    
T  40339309 tttcaaatccaaattacgggtcatccgcttcaactcaaccccaatacatggagtttatcccaac 40339246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 5036854 - 5037017
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    ||||| || ||||| ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | ||||||||| |||||   || || |||    
T  5036854 tatggaatgagaggaccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgttcctggaattattagag 5036953  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| |   |||||| ||| | ||||||  | | ||||||||||||||||||    
T  5036954 ttccaaatccaaattacgagtcatccgcttctactcaaccccaatacatggagtttatcccaac 5037017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 26240115 - 26239977
Alignment:
Q  62 atttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtc 161  Q
    ||||||||||| |||| ||| ||||||||| | |||| ||||||  ||  | |||||||||||||||  ||| || |||| ||| ||||||||| ||| |    
T  26240115 atttcaaatgacaggcataaacaaacaccactaagggttcctgcttcacaaaatccaactgctcctggagttattagagttccaaatccaaattgtgggc 26240016  T
Q  162 catccggttcaagtcaacctaagttcatggagtttatcc 200  Q
    |||||| ||| | ||||||  | | ||||||||||||||    
T  26240015 catccgcttctactcaaccccaatacatggagtttatcc 26239977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 8609527 - 8609442
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcc 126  Q
    |||||||| ||||| ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||| ||||||    
T  8609527 tatggcatgagaggaccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaattgctcc 8609442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 13282800 - 13282884
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctc 125  Q
    |||||||| ||| | ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | ||||||||||||    
T  13282800 tatggcatgagaagaccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctc 13282884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 38547630 - 38547714
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctc 125  Q
    |||||||| ||||| ||||| ||||||||||| |  | ||| ||||||||| ||||||||||||| |||  | ||||||||||||    
T  38547630 tatggcatgagaggaccagtgatttcaaatgacatacataaacaaacaccactgaggggtcctgctccacaaaatccaactgctc 38547714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 9185940 - 9185995
Alignment:
Q  143 ccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttat 198  Q
    |||||||||| |||| ||||||||||||| ||||||||||| || ||| |||||||    
T  9185940 ccatatccaagttatagtccatccggttcgagtcaacctaaatttatgtagtttat 9185995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 13108076 - 13108012
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgc 105  Q
    |||||||| ||||| ||||  ||||||||||| | || ||| ||||||||| |||||||||||||    
T  13108076 tatggcatgagaggaccagcgatttcaaatgacatgcataaacaaacaccactgaggggtcctgc 13108012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 201
Target Start/End: Original strand, 22272680 - 22272836
Alignment:
Q  45 gcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgcc 144  Q
    |||| ||||| ||||| | ||||||||  | || ||| |||||||||  |||||||||||| |||  | |||||| |||||||   ||| || |||| ||    
T  22272680 gcatgagaggaccagtgacttcaaatggcatgcataaacaaacaccaccgaggggtcctgctccacaaaatccaattgctcctagagttattagagttcc 22272779  T
Q  145 atatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatccc 201  Q
    | |||||||||||||  |||||| ||| | ||||||  | | |||||||||||||||    
T  22272780 aaatccaaattatgggtcatccgcttctactcaaccccaatacatggagtttatccc 22272836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 23965363 - 23965569
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| ||||    
T  23965363 ggtatggcattagagggcctattatttcaaatgagaggcctaagcaaacaccattgaggggtcttgcaccatcacatccaactgctcctggcgttattcg 23965462  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    ||||||||||||| ||||||||||||||  |||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  23965463 agtgccatatccagattatggtccatccaattcaagtcaacctaagttcatgaagtttatcccaacccccgactttccaaagaagtgaagcttgatgcat 23965562  T
Q  239 gcttaga 245  Q
    |||||||    
T  23965563 gcttaga 23965569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 31914347 - 31914553
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| | | ||| ||||||||| ||||||||||||| || |||||||||    
T  31914347 ggtatggcattagaggaccaattatttcaaatgagaggcctaagcaaacatcagtaacgagtcatgcaccatcgcatccaactgctcttggcgttgttcg 31914446  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||| ||||||||||    
T  31914447 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccaccggcttgccaaagaagtgaaacttgatgcat 31914546  T
Q  239 gcttaga 245  Q
    |||||||    
T  31914547 gcttaga 31914553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 6057739 - 6057936
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||| |||||||||| |||  |||||| |||||| |||| || |    
T  6057739 ggtatggcattagagggccaattatttcaaatgagaggcctaaacaaacaccaatgaggg-tcctgcaccaacac--ccaactcctcctggcgttattag 6057835  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    ||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||| |||    
T  6057836 agtaccatatccaaattatggtccacccggttcaactcaacctaagtttatggagtttatcccaaccctcggctttccaaagaagtgatacttgatacat 6057935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 39 - 238
Target Start/End: Original strand, 17199876 - 17200074
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| ||||||||| ||| |||||||||||||||||  ||| ||||||||| ||||||||||| ||||| |||||||||||||||||| |||| || |    
T  17199876 ggtatgtcattagagggccaattatttcaaatgagaggtataaacaaacaccaatgaggggtcctacaccaacacatccaactgctcctg-cgttattag 17199974  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    ||| |||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||  ||||||||||    
T  17199975 agtaccatatccaaattatggtccatctagttcaactcaacctaagttcatggagtttatcccaacccccgactttccaaagaagtgatacttgatgcat 17200074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 39 - 239
Target Start/End: Complemental strand, 25972508 - 25972308
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||||||| | ||| || ||| ||||||||||||||| ||||||||| ||||||||||  |||||  ||||||||||||||||| |||| || |    
T  25972508 ggtatggcattagatggccaatttttttaaatgagaggcctaaacaaacaccaatgaggggtcccacaccaggacatccaactgctcctggcgttattag 25972409  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    ||| |||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||  ||||||||||    
T  25972408 agtaccatatccaaattatggttcatctggttcaactcaacctaagttcatggagtttatcccaacccccgactttccaaagaagtgatacttgatgcat 25972309  T
Q  239 g 239  Q
    |    
T  25972308 g 25972308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 48456808 - 48457004
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| ||||||||  ||| |||||||| ||||||||||||||||||||| | ||| ||||| | ||||| |||||| |||||||| || | || || |    
T  48456808 ggtatgacattagagaaccaattatttcatatgagaggcctaagcaaacactaatgaagggtcatacaccagcacatcaaactgctcatggcattattag 48456907  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatg 235  Q
    |||  ||||| ||| |||||||||||||||||| ||||||||||| |||| ||||||||||||||||| | | ||||||||||||||| ||||||||    
T  48456908 agtatcatattcaagttatggtccatccggttcgagtcaacctaaattcacggagtttatcccaacccccagatttccaaagaagtgatgcttgatg 48457004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 226
Target Start/End: Original strand, 367098 - 367284
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    ||||||| || ||| | ||||||||||||| ||||| | ||| ||||||||||||||||||| |||| ||| ||||||||||||||||||  ||| || |    
T  367098 ggtatggaatgagatgaccagttatttcaactgagaagtctacgcaaacaccagtgaggggt-ctgctccaccacatccaactgctcctggagttattag 367196  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaa-cctaagttcatggagtttatcccaaccctcggctttccaaagaagtga 226  Q
    | || ||  ||||| |||||||| ||||||||| | |||| ||||| ||||||||||||||| ||||||   | |||||||||||||||    
T  367197 aatgacacgtccaagttatggtctatccggttctactcaatcctaa-ttcatggagtttatctcaaccccaagatttccaaagaagtga 367284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 13035079 - 13035275
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    ||||||| |||||||| ||| ||||||||  ||||| | ||| ||||| ||||||||  ||| |||| ||| |||||||||||||| |||| ||  ||      
T  13035079 ggtatggtattagaggaccaattatttcagctgagaagtctacgcaaataccagtgaacggtactgctccaccacatccaactgcttctgaagtaattaa 13035178  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatg 235  Q
    | || ||||||||| ||||||  |||||||||| | ||||||  | ||||||||||||||||||||||  || ||||||||||||||  ||||||||    
T  13035179 aatgtcatatccaagttatgggtcatccggttctaatcaaccataattcatggagtttatcccaaccccaggatttccaaagaagtggcgcttgatg 13035275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 46811859 - 46811691
Alignment:
Q  63 tttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtcc 162  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||||   ||||||||| |||||| | |  || |||| | ||||||||  ||||||||    
T  46811859 tttcaactgataggcctaagcaaacaccaatgaggggtcctgcaccaggtcatccaacttctcctggcataattagagttctatatccaacctatggtcc 46811760  T
Q  163 atccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
    | | ||||| | ||||||| | || ||| ||||||| ||||||| ||  ||||||||||||||||||||    
T  46811759 acctggttcgaatcaacctcaatttatgaagtttataccaacccccgaatttccaaagaagtgaagctt 46811691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 23905981 - 23905818
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| | ||| ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||| ||  ||| || |||    
T  23905981 tatggcatgacaggaccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcttggagttattagag 23905882  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| ||  |||||| ||| | ||||||| | | ||||||||||||||||||    
T  23905881 ttccaaatccaaattacgggtcatccgcttctactcaacctcaatacatggagtttatcccaac 23905818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 46995963 - 46995768
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||| ||||||| ||| || |||||  ||| ||| ||| |||||||||| ||||||||||||||||| | |||| |||| || ||| | |  || |    
T  46995963 ggtatggccttagaggaccaattctttcagttgataggtctaggcaaacaccaatgaggggtcctgcaccagctcatctaactcctgctggcataattag 46995864  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaac---ctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     || ||||||||||  |||||||||||| |||| | |||||   |||| | |||||||||||| |||||   ||| ||||||||||||||| ||||    
T  46995863 ggttccatatccaacctatggtccatccagttcgactcaacctactaaatgcatggagtttataccaactaccggatttccaaagaagtgatgctt 46995768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 30940138 - 30939975
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| | ||| ||||| ||||||||||| | || ||| ||||||||  ||||||||| ||| |||  | |||||||||||||||  ||| ||  ||    
T  30940138 tatggcatgaaaggaccagtgatttcaaatgacatgcataaacaaacaccgctgaggggtcttgctccacaaaatccaactgctcctggagttattacag 30940039  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||||||  |||||| ||| | ||||||  | | ||||||||||||||||||    
T  30940038 ttccaaatccaaattatgggtcatccgcttctactcaaccccaatacatggagtttatcccaac 30939975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 46867100 - 46867025
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcaca 114  Q
    |||||| ||||||||| ||| ||||||||||||||| ||| || ||||||||| ||||||||||| ||||| ||||    
T  46867100 ggtatgacattagagggccaattatttcaaatgagaagccaaaacaaacaccaatgaggggtcctacaccagcaca 46867025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 37115249 - 37115089
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||||| ||||||||||  | || ||| ||||||||| ||||||||||||| |||  | |||||||| ||||||  ||| || |||    
T  37115249 tatggcatcagaggaccagtgatttcaaatggcatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactactcctggagttattagag 37115150  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatccc 201  Q
    | ||| ||||||||||    ||||||| ||| | ||||||  | | |||||||||||||||    
T  37115149 ttccaaatccaaattacatgccatccgcttctactcaaccataatacatggagtttatccc 37115089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 29996223 - 29996060
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||| | ||||||||||| | || ||| ||||||||| ||||||||||||| |||    |||||||||||| ||  ||| || ||     
T  29996223 tatggcatgagaggaccaatgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaggatccaactgctcttggagttattagaa 29996124  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| ||  |||||| ||| | ||||||  | | ||||||||||||||||||    
T  29996123 ttccaaatccaaattacgggtcatccgcttctactcaaccccaatacatggagtttatcccaac 29996060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 232
Target Start/End: Complemental strand, 48852055 - 48851864
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||| | ||||||||||| || | ||| ||||||| | ||||||| ||||| |||  |  |||||||||| |||  ||| || |||    
T  48852055 tatggcatgagaggaccaatgatttcaaatgacagacataaacaaacactactgaggggccctgctccacaaagtccaactgcttctggagttattagag 48851956  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttg 232  Q
    | ||| |||||||||| ||  |||||| ||| | ||||||  | | |||||||||||||||||||   || ||||||||| ||||| |||||    
T  48851955 ttccaaatccaaattacgggtcatccgcttctactcaaccccaatacatggagtttatcccaacctcaggatttccaaagtagtgatgcttg 48851864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 7402300 - 7402462
Alignment:
Q  69 atgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccgg 168  Q
    |||||||| |||||||||||| ||||||||||| ||| ||| ||||||||| | | | ||  ||| || ||||  ||||||||| |||||  ||||  ||    
T  7402300 atgagaggactaagcaaacacgagtgaggggtcttgctccaccacatccaatttcacttggagttattagagtatcatatccaagttatgagccatttgg 7402399  T
Q  169 ttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
    ||| | ||||||  | |||||||| |||||||||||||  |  ||| ||||||||||| ||||    
T  7402400 ttctactcaaccctaattcatggaatttatcccaaccccagaattttcaaagaagtgatgctt 7402462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 47385932 - 47385851
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactg 122  Q
    |||||||| ||||| ||||| |||| |||||| |||| ||| ||||||||| ||||||||||||| |||  | |||||||||    
T  47385932 tatggcatgagaggaccagtgattttaaatgacaggcataaacaaacaccactgaggggtcctgctccacaaaatccaactg 47385851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 35693079 - 35692992
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctg 128  Q
    |||||||| ||||| | ||| ||||||||||| | || ||| ||||||||| ||| ||||||||| |||  | |||||||||||||||    
T  35693079 tatggcatgagaggactagtgatttcaaatgacatgcataaacaaacaccactgaagggtcctgctccacaaaatccaactgctcctg 35692992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 46439218 - 46439076
Alignment:
Q  62 atttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtc 161  Q
    |||||||| || | || ||| ||||||||| | ||||||||||| |||  | |||||| ||||| ||  |||||| |||| ||| |||||||||| ||      
T  46439218 atttcaaacgacatgcataaacaaacaccattaaggggtcctgctccacaaaatccaattgctcttggagttgttagagttccaaatccaaattacgggt 46439119  T
Q  162 catccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    |||||| ||| | ||||||  | | ||||||||||||||||||    
T  46439118 catccgcttctactcaaccccaatacatggagtttatcccaac 46439076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 47341107 - 47340947
Alignment:
Q  74 aggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaa 173  Q
    ||||||||||| |||||| |||||| | || ||||| |  |||||||| || ||| | |  || | || ||||||||||  ||||||||| ||||||| |    
T  47341107 aggcctaagcagacaccaatgagggattcttcaccagcttatccaactcctgctggcatgattagggttccatatccaacctatggtccacccggttcga 47341008  T
Q  174 gtcaaccta---agttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     ||||||||   | |||||||||||||| ||||| | ||  ||||||||||||||| ||||    
T  47341007 ctcaacctactaaattcatggagtttataccaactcccgaatttccaaagaagtgatgctt 47340947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 12903280 - 12903365
Alignment:
Q  40 gtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctc 125  Q
    ||||||| ||||||| |||  ||||| || || |||| ||||||||||| |||||||||||| | | ||| ||||| |||||||||    
T  12903280 gtatggcgttagaggaccaaatattttaactgtgaggtctaagcaaacatcagtgaggggtcatactccaacacatgcaactgctc 12903365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 32839868 - 32839913
Alignment:
Q  60 ttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgc 105  Q
    ||||||||| ||||||| ||||| |||||| |||||||||||||||    
T  32839868 ttatttcaactgagaggtctaagaaaacactagtgaggggtcctgc 32839913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 6603985 - 6604105
Alignment:
Q  84 aaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaagtcaacctaa 183  Q
    ||||| || ||||||||||||| |||  | ||||||||||||||   ||| || |||| ||| |||||||||| |   |||||| ||| | ||||||| |    
T  6603985 aaacatcactgaggggtcctgctccacaaaatccaactgctcctagagttattagagttccaaatccaaattacgagtcatccgcttctactcaacctca 6604084  T
Q  184 gttcatggagtttatcccaac 204  Q
     | ||||||||||||||||||    
T  6604085 atacatggagtttatcccaac 6604105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 27665774 - 27665690
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctc 125  Q
    |||||||| ||||| ||| | ||||||||||| | || ||| ||||||||| |||||||| |||| |||  | ||||||||||||    
T  27665774 tatggcatgagaggaccaatgatttcaaatgacatgcataaacaaacaccactgaggggttctgctccacaagatccaactgctc 27665690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 5336 - 5540
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| | | ||| ||||||||||||||||||||||| || | |||||||    
T  5336 ggtatggcattagaggaccaattatttcaaatgagaggcctaagcaaacatcagtaacgagtcatgcaccatcacatccaactgctcttggcattgttcg 5435  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | ||||||||||||| ||||||||||    
T  5436 agtgtcatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccaccggcgtgccaaagaagtgaaacttgatgcat 5535  T
Q  239 gctta 243  Q
    |||||    
T  5536 gctta 5540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 39282134 - 39282322
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||| |||||||    
T  39282134 ggtatggtattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcacc------------------tgacattgttcg 39282215  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39282216 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaacccccggctttccaaagaagtgaagcttgatgcat 39282315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 39 - 245
Target Start/End: Complemental strand, 860794 - 860598
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||           ||     
T  860794 ggtatggcattagagggccaattatttcaaatgagaggcctaagcaaacaccagtgaggagttctgcaccatcacatccaactgct-----------tca 860706  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaa-ccctcggctttccaaagaagtgaagcttgatgca 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  860705 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaatcccccgactttccaaagaagtgaagcttgatgca 860606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 39 - 245
Target Start/End: Complemental strand, 15806916 - 15806728
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||                  |||| |||||||    
T  15806916 ggtatggcattagaggtccagttatttcaaatgagagacctaagcaaacaccagtgaggggtcctgcacc------------------tgacattgttcg 15806835  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15806834 agtgccatatccaagttatggtccatccggttcaagtcaacctatgttcatggagtttatcccaacccccggctttccaaagaagtgaagcttgatgcat 15806735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 32607943 - 32607796
Alignment:
Q  98 ggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagttta 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  32607943 ggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggttcatccagttcaagtcaacctaagttcatggagttta 32607844  T
Q  198 tcccaaccctcggctttccaaagaagtgaagcttgatgcatgcttaga 245  Q
    ||||||||  | ||||||||||||||||||||||||||||||||||||    
T  32607843 tcccaacctccagctttccaaagaagtgaagcttgatgcatgcttaga 32607796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 39 - 238
Target Start/End: Original strand, 14000760 - 14000959
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| ||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||| ||||| | |||| | |||||||| || |||| || |    
T  14000760 ggtatgacattagagggccaattatttcaaatgagaggcctaaacaaacaccaatgaggggtcttgcactagcacacctaactgctcatggcgttattag 14000859  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    ||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |  ||||  ||||||||||||  ||||||||||    
T  14000860 agtaccatatccaaattatggtccatccgattcaactcaacctaagttcatggagtttatcccaactcctggctccccaaagaagtgatacttgatgcat 14000959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 40098540 - 40098736
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    ||||||| |||||||| ||| |||||| |||| ||||||||||| |||||||||||||||||| ||||||| ||| |||||||||||||||| || || |    
T  40098540 ggtatggtattagagggccaattattttaaatcagaggcctaagtaaacaccagtgaggggtcttgcaccagcacttccaactgctcctgacattatttg 40098639  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatg 235  Q
    |||| ||||||||| |||||||||||||||||  | ||||| |||  |||||||||||||||| |||||| | ||||||||||||||| | ||||||    
T  40098640 agtgtcatatccaacttatggtccatccggtttgaatcaacataaactcatggagtttatcccgaccctcagatttccaaagaagtgatgtttgatg 40098736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 4415966 - 4415770
Alignment:
Q  40 gtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcga 139  Q
    ||||||||||||| |  || ||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||| || | || || |     
T  4415966 gtatggcattagacggtcaattatttcaaatgagaggcctaagaaaacactagtgaggggtcctgcaccaactcatccaactgctcttggcattattagt 4415867  T
Q  140 gtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgc 236  Q
    || |||||| ||| |||||||||||| |||||||  ||| |||||||||||||| ||||||||||| || | |||||||||||||||  ||||||||    
T  4415866 gttccatattcaacttatggtccatcaggttcaacccaatctaagttcatggagattatcccaaccttcagatttccaaagaagtgatacttgatgc 4415770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 227
Target Start/End: Original strand, 42002386 - 42002574
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||  ||||||| |||||| |||||  ||| |||||||||||||||||| |||||| |||||||||| | ||||||||| |||||  | |  || |    
T  42002386 ggtatggtcttagaggaccagttctttcagctgataggcctaagcaaacaccaatgagggatcctgcaccaactcatccaactcctccttccataattag 42002485  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaa 227  Q
    ||| ||||||||||  ||||||||| ||||||| | ||||||| | |||||| ||||||| ||||||| ||| ||| ||||||||||||    
T  42002486 agttccatatccaacctatggtccacccggttcgaatcaacctcaattcatgaagtttataccaacccccggattttcaaagaagtgaa 42002574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 232
Target Start/End: Complemental strand, 40151474 - 40151283
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| || | |||||||| ||||||| |||||||||||| | ||||||||||||| ||| ||||||||||||||||||   || || |||    
T  40151474 tatggcatgagaggacctgatatttcaactgagaggtctaagcaaacactaatgaggggtcctgctccagcacatccaactgctcctggacttattagag 40151375  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttg 232  Q
    |  |||||||   |||||| ||||  ||||| | ||||||| | |||||||||||||||||||| |  || ||||||||||||||| |||||    
T  40151374 tatcatatcctggttatgggccatatggttctactcaacctcaattcatggagtttatcccaacaccaggatttccaaagaagtgatgcttg 40151283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 91608 - 91413
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    ||||||||  |||||| ||| || |||||  ||| ||||||| |||||||||| ||||||||||||||||| | ||||||||| || ||| | |  || |    
T  91608 ggtatggccctagaggaccaattctttcagttgataggcctaggcaaacaccaatgaggggtcctgcaccagctcatccaactcctgctggcataattag 91509  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaac---ctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     || ||||||||||  ||||||||||   |||| | |||||   |||| |||||||||||||| ||||   |||| ||||||||||||||| ||||    
T  91508 ggttccatatccaacctatggtccatttagttcgactcaacctactaaattcatggagtttataccaattatcggatttccaaagaagtgatgctt 91413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 4046701 - 4046880
Alignment:
Q  56 ccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaatt 155  Q
    |||||||||||||  |||| | ||| ||||||||||  || |||||||   ||| |||||||||||||| ||   ||| || || || ||||||||| ||    
T  4046701 ccagttatttcaacggagaagtctacgcaaacaccaacgaagggtcctaatccaccacatccaactgctactagagttattagaatgacatatccaagtt 4046800  T
Q  156 atggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgc 236  Q
    |||||| ||  ||||| | ||||||  | ||||||||||||||||||||||  || ||||||||||||||| | |||||||    
T  4046801 atggtc-atttggttctactcaaccataattcatggagtttatcccaaccccaggatttccaaagaagtgatgtttgatgc 4046880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 29908917 - 29908757
Alignment:
Q  74 aggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaa 173  Q
    |||| ||||||||||||| |||||| |||||||||| | |||||||||  | ||| | |  || | || ||||||||||  ||||||||||||||||| |    
T  29908917 aggcttaagcaaacaccaatgagggttcctgcaccagctcatccaactcatgctggcataattagggttccatatccaacctatggtccatccggttcga 29908818  T
Q  174 gtcaac---ctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     |||||   |||| ||| |||||||||| |||||  |||  ||||||||||||||| ||||    
T  29908817 ttcaacctactaaattcgtggagtttataccaactttcgaatttccaaagaagtgatgctt 29908757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 203
Target Start/End: Complemental strand, 36571 - 36414
Alignment:
Q  49 tagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatat 148  Q
    |||||| ||| || |||||  ||| ||||||| |||||||||| ||||||||||||||||| | ||||||||| || ||| | |  || | || ||||||    
T  36571 tagaggaccaattctttcagttgataggcctaggcaaacaccaatgaggggtcctgcaccagctcatccaactcctgctggcataattagggttccatat 36472  T
Q  149 ccaaattatggtccatccggttcaagtcaac---ctaagttcatggagtttatcccaa 203  Q
    ||||  |||||||||||  |||| | |||||   |||| |||||||||||||| ||||    
T  36471 ccaacctatggtccatctagttcgactcaacctactaaattcatggagtttataccaa 36414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 17696621 - 17696736
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| | ||| ||||||||| | | || ||| ||||||||| |||||| |||||| |||  | |||||||||||||||  |||||| |||    
T  17696621 tatggcatcagaggactagtgatttcaaataacatgcataaacaaacaccactgagggatcctgctccacaaaatccaactgctcctggagttgttagag 17696720  T
Q  141 tgccatatccaaatta 156  Q
    | ||| ||||||||||    
T  17696721 ttccaaatccaaatta 17696736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 62566 - 62506
Alignment:
Q  185 ttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcatgcttaga 245  Q
    ||||||||||||||| |||||| ||| ||| |||||||||||  ||||||||||| |||||    
T  62566 ttcatggagtttatcacaacccccggattttcaaagaagtgatacttgatgcatgtttaga 62506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 26584523 - 26584339
Alignment:
Q  56 ccagttatttcaaatgagaggcctaagcaaacaccagtgag----gggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatcca 151  Q
    |||||||||| || ||||| | ||| ||||||||||||| |    |||| || | ||| |||||||||||||||||   ||| || || || ||||||||    
T  26584523 ccagttattttaactgagaagtctacgcaaacaccagtgggaggggggttctactccaccacatccaactgctcctagagttattagaatgacatatcca 26584424  T
Q  152 aattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgc 236  Q
    | ||||||  |||||| ||| | ||||||  | ||||| |||| |||||||||||  || ||| |||| |||||| |||||||||    
T  26584423 agttatggatcatccgattctactcaaccctaattcatcgagtatatcccaaccccaggattttcaaataagtgatgcttgatgc 26584339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 42518963 - 42518800
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||||| |||||||| || | || ||| |||||| ||  ||||||| |||| |||  | |||||||||||||||  ||| || |||    
T  42518963 tatggcatgagaggaccagtgatttcaaacgatatgcataaacaaacaacaccgaggggtgctgctccacgaaatccaactgctcctggagttattagag 42518864  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| |   |||||  ||||| ||||||  | | ||||||||||||||||||    
T  42518863 ttccaaatccaaattacgagacatccacttcaactcaaccccaatacatggagtttatcccaac 42518800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 2767349 - 2767411
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcct 103  Q
    |||||||| ||||| ||||| ||||||||||| | || ||| ||||||||| |||||||||||    
T  2767349 tatggcatgagaggaccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcct 2767411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 40560638 - 40560724
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcct 127  Q
    |||||||| ||||| ||| | ||||||||||  | || ||| ||||||||| ||||||||||||| |||  | ||||||||||||||    
T  40560638 tatggcatgagaggaccaatgatttcaaatggcatgcataaacaaacaccattgaggggtcctgctccacaaaatccaactgctcct 40560724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 44709486 - 44709402
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctc 125  Q
    |||||||| ||||| ||||| ||| ||||||| | || ||| ||||||||| ||||||||||||| |||  |  |||||||||||    
T  44709486 tatggcatgagaggaccagtgattacaaatgacatgcataaacaaacaccattgaggggtcctgctccacaaactccaactgctc 44709402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 39 - 243
Target Start/End: Complemental strand, 37478698 - 37478512
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||| |||||||    
T  37478698 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcacc------------------tgacattgttcg 37478617  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  37478616 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaacccccgactttccaaagaagtgaagcttgatgcat 37478517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 50132368 - 50132568
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||| ||||  ||| |||||||||||||||| |||||||||||| || |||||| |||||||||| ||||||||||||||||||||||| || |    
T  50132368 ggtatggcatcagagagccaattatttcaaatgagagacctaagcaaacatcaatgagggatcctgcaccagcacatccaactgctcctgacgttattag 50132467  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||  ||||||||||||||||||  ||||||||||    
T  50132468 agtaccatatccaaattatggtccatccggttcaactcaacctaagttcatggagtttatcctaacccctggctttccaaagaagtgatacttgatgcat 50132567  T
Q  239 g 239  Q
    |    
T  50132568 g 50132568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 27383018 - 27383218
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| ||||||||| ||| |||||| ||||||||||||||  ||||||| ||||||||||||||||||| ||||||||||||||||||||||| || |    
T  27383018 ggtatgacattagagggccaattattttaaatgagaggcctagtcaaacactagtgaggggtcctgcaccagcacatccaactgctcctgacgttattag 27383117  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||||| |||  ||||||||||    
T  27383118 agttccatatccaaattatggttcatccggttcaactcaacctaagttcatggagtttatcccaacccccggattttcaaagaactgatacttgatgcat 27383217  T
Q  239 g 239  Q
    |    
T  27383218 g 27383218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 45 - 235
Target Start/End: Complemental strand, 9591052 - 9590862
Alignment:
Q  45 gcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgcc 144  Q
    |||||||||| ||| |||||| |||||||||||||||||||||| || ||||||||| || |||| ||||||||||||||||||||| | ||  ||| ||    
T  9591052 gcattagaggaccaattattttaaatgagaggcctaagcaaacatcaatgaggggtcttgtaccagcacatccaactgctcctgacgctattaaagtacc 9590953  T
Q  145 atatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatg 235  Q
    |||||||| |||||||||||||||||| | |||| |||| |||||||||||||||||||||| | | ||||||||||||||| ||||||||    
T  9590952 atatccaagttatggtccatccggttcgactcaatctaaattcatggagtttatcccaacccccagatttccaaagaagtgatgcttgatg 9590862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 44973374 - 44973566
Alignment:
Q  47 attagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccat 146  Q
    |||||||| ||| |||||||||||||||||||||| ||||||||| ||||  | ||| ||||| ||||||||||||||||||  ||| ||  ||| ||||    
T  44973374 attagagggccaattatttcaaatgagaggcctaaacaaacaccaatgagaagccctacaccagcacatccaactgctcctggagttattaaagtaccat 44973473  T
Q  147 atccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcatg 239  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||  | |||||||||||||||||||  ||| |||||||    
T  44973474 atccaaattatggtccatccggtttaactcaacctaagttcatggagtttatcccaaatcccggctttccaaagaagtgatactttatgcatg 44973566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 44557752 - 44557585
Alignment:
Q  63 tttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtcc 162  Q
    |||||| ||| |||||||||||||||||| ||||||||| ||||| |   ||||||||| |||||| | |  || |||| ||||||||||  ||||||||    
T  44557752 tttcaactgataggcctaagcaaacaccaatgaggggtcatgcactaggtcatccaactcctcctggcataattagagttccatatccaacctatggtcc 44557653  T
Q  163 atccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
    | ||||||| | ||||||| | ||||||||||||||  |||||| ||| ||||||||||||||||||||    
T  44557652 acccggttcgaatcaacctcaattcatggagtttat-acaacccccggatttccaaagaagtgaagctt 44557585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 204
Target Start/End: Complemental strand, 41761440 - 41761293
Alignment:
Q  56 ccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaatt 155  Q
    ||||| ||||||||| | | || ||| ||||||||| ||||||||||||| ||| || |||||||||||||||| ||| || |||| ||| |||||||||    
T  41761440 ccagtgatttcaaataacatgcataaacaaacaccactgaggggtcctgctcca-caaatccaactgctcctgaagttattagagttccaaatccaaatt 41761342  T
Q  156 atggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | || ||||||| ||| | ||||||  | | ||||||||||||||||||    
T  41761341 acggaccatccgcttctactcaaccccaatacatggagtttatcccaac 41761293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 2349830 - 2349675
Alignment:
Q  74 aggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaa 173  Q
    ||||||||| | |||||| |||| |||||||||||| | ||||||||| || ||| | |  || | || ||||||||||  ||||||||| ||||||| |    
T  2349830 aggcctaagaatacaccaatgagcggtcctgcaccagctcatccaactcctgctggcatgattagggttccatatccaacctatggtccacccggttcga 2349731  T
Q  174 gtcaaccta---agttcatggagtttatcccaaccctcggctttccaaagaagtga 226  Q
     ||||||||   | |||||||||||||| ||||| ||||| |||||||||||||||    
T  2349730 ctcaacctactaaattcatggagtttataccaactctcggatttccaaagaagtga 2349675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 231
Target Start/End: Original strand, 10767170 - 10767315
Alignment:
Q  86 acaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaagtcaacctaagt 185  Q
    |||||| ||||||||||||||||| | ||||||||| || ||| | |  || | || ||||||||||  ||||||||| ||||||| | ||||||| | |    
T  10767170 acaccaatgaggggtcctgcaccagctcatccaactcctgctggcatgattagggttccatatccaacctatggtccacccggttcgactcaacctcaat 10767269  T
Q  186 tcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
    ||||||||||||| ||||| | ||| ||||| ||||||||| ||||    
T  10767270 tcatggagtttataccaactcccggatttcccaagaagtgatgctt 10767315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 27625675 - 27625830
Alignment:
Q  74 aggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaa 173  Q
    |||||||||||||||||| |||||||||||| ||||   ||||||||| |||||| | |  || |||| |||||| |||  ||||||||  ||| ||| |    
T  27625675 aggcctaagcaaacaccaatgaggggtcctgtaccaggtcatccaactcctcctggcataattagagttccatattcaacctatggtcc-cccgattcga 27625773  T
Q  174 gtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     ||||||| | ||||||||||||||  |||||  ||| ||||||||||||||||||||    
T  27625774 atcaacctcaattcatggagtttat-acaacctccggatttccaaagaagtgaagctt 27625830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 231
Target Start/End: Complemental strand, 10371974 - 10371781
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||| ||||||| || |||  ||||  ||| ||||||||| | |||||| ||||||||||||||||| | ||||||||| || ||| | |  || | |    
T  10371974 tatggccttagaggaccggttccttcagctgataggcctaagaatacaccaatgaggggtcctgcaccagctcatccaactcctgctggcatgattaggg 10371875  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacc---taagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
    | ||||||||||  ||||||||| ||||||| | ||||||   ||| |||||||||||||| ||||| | ||| ||||| || |||||| ||||    
T  10371874 ttccatatccaacctatggtccacccggttcgactcaacctattaaattcatggagtttataccaactcccggatttcccaacaagtgatgctt 10371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 180
Target Start/End: Complemental strand, 35403389 - 35403250
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| | ||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | || ||||||||||||  ||| || |||    
T  35403389 tatggcatgagaggactagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaattcaactgctcctggagttattagag 35403290  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacc 180  Q
    | ||| |||||||||| || ||||||| ||| | ||||||    
T  35403289 ttccagatccaaattacgggccatccgcttctaatcaacc 35403250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 49523529 - 49523692
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||||| ||||||||||| | || ||| |||||| || ||||||||||| | |||  | |||||||||||| ||  ||| || |||    
T  49523529 tatggcatgagaggaccagtgatttcaaatgacatgcataaacaaacatcaatgaggggtcctactccacaaaatccaactgctcttggagttattagag 49523628  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| ||  |||||| ||| | ||||||  | | ||||||||||||||||||    
T  49523629 ttccaaatccaaattacgggtcatccgcttctactcaaccccaatacatggagtttatcccaac 49523692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 4614013 - 4614085
Alignment:
Q  154 ttatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtga 226  Q
    |||||| ||||||||||||| ||||||||| |||||| || |||||||||||   || |||||||||||||||    
T  4614013 ttatgggccatccggttcaactcaacctaaattcatgaagcttatcccaacctcaggatttccaaagaagtga 4614085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 41781932 - 41782032
Alignment:
Q  56 ccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaatt 155  Q
    ||||| ||||||||||| |||| ||| ||||||||| ||||||||||||| |||  | || ||||||||||||  ||| || |||| ||| |||||||||    
T  41781932 ccagtgatttcaaatgacaggcataaacaaacaccactgaggggtcctgctccacaaaattcaactgctcctggagttattagagttccaaatccaaatt 41782031  T
Q  156 a 156  Q
    |    
T  41782032 a 41782032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 7149951 - 7150111
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||| ||||| ||| ||||||||| ||||| | ||| ||||| || | ||| | || |||| ||| |||||||||||||| |||| ||  || |    
T  7149951 ggtatggcataagaggaccaattatttcaactgagaagtctacgcaaatactaatgaagcgtactgctccaccacatccaactgctactgaagtcattag 7150050  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatc 199  Q
    | || ||||||||| ||||||  ||| | |||| | ||||||  | |||||||||||||||    
T  7150051 aatgtcatatccaagttatgggtcattcagttctactcaaccctaattcatggagtttatc 7150111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 52867873 - 52867801
Alignment:
Q  56 ccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctg 128  Q
    ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||||||    
T  52867873 ccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctg 52867801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 51012330 - 51012417
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctg 128  Q
    |||||||| ||||| | ||| ||||||||||| | || ||| |||||| || ||||||||||||| |||  | |||||||||||||||    
T  51012330 tatggcatgagaggactagtgatttcaaatgacatgcataaacaaacatcactgaggggtcctgctccacaaaatccaactgctcctg 51012417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 48646465 - 48646304
Alignment:
Q  42 atggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagt 141  Q
    ||||||| ||||  ||||| |||| |||||  |||| ||| |||||| || ||| ||||||||| |||  | |||||||||||||||  ||| || ||||    
T  48646465 atggcatgagagaaccagtgattttaaatggcaggcataatcaaacatcattgaagggtcctgctccacaaaatccaactgctcctggagttattagagt 48646366  T
Q  142 gccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaa 203  Q
      || ||||||||| ||| ||||| | ||| | ||||||  | | |||||||||||||||||    
T  48646365 ttcaaatccaaattgtgggccatctgcttctactcaaccccaatacatggagtttatcccaa 48646304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 35996850 - 35996936
Alignment:
Q  143 ccatatccaaattatggtccatccggttcaagtcaaccta---agttcatggagtttatcccaaccctcggctttccaaagaagtga 226  Q
    ||||||||||  ||||||||| ||||||| | ||||||||   | || ||||||||||| ||||| | ||| |||||||||||||||    
T  35996850 ccatatccaacctatggtccacccggttcgactcaacctactaaatttatggagtttataccaactcccggatttccaaagaagtga 35996936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 5133964 - 5134161
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||| |||||||||| |||  ||||||||||||| |||| || |    
T  5133964 ggtatggcattagagggccaattatttcaaatgagaggcctaaacaaacaccaatgaggg-tcctgcaccaacac--ccaactgctcctggcgttattag 5134060  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    ||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  5134061 agtaccatatccaaattatggtccatccagttcaactcaacctaagttcatggagtttatcccaactctcggctttccaaagaagtgatacttgatgcat 5134160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 5126709 - 5126906
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||| |||||||||| |||  |||||||||| || |||| || |    
T  5126709 ggtatggcattagagggccaattatttcaaatgagaggcctaaacaaacaccaatgaggg-tcctgcaccaacac--ccaactgctcttggcgttattag 5126805  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    |||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  5126806 agtatcatatccaaattatggtccatccggttcaactcaacctaagttcatggagtttatcccaactctcggctttccaaagaagtgatacttgatgcat 5126905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 54093458 - 54093664
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| ||||||| | | | ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||  |||| || |    
T  54093458 ggtatgacattagacggcaaattatttcaaatgagaggcctaagcaaacatcagtgaggggtcctgcaccaacacatccaactgctcctagcgttattag 54093557  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    | | |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| | | |||||||||||||||  ||||||||||    
T  54093558 aattccatatccaaattatggttcatccggttcaactcaatctaagttcatggagtttatcccaacccccagatttccaaagaagtgatacttgatgcat 54093657  T
Q  239 gcttaga 245  Q
    | |||||    
T  54093658 gtttaga 54093664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 41624629 - 41624821
Alignment:
Q  47 attagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccat 146  Q
    |||||||| ||| ||||||||||||||||| |||| ||||||||| |||| | |||||||||| ||||||| |||||||||| |||| || |||| ||||    
T  41624629 attagagggccaattatttcaaatgagaggtctaaacaaacaccaatgagagatcctgcaccagcacatcctactgctcctggcgttattagagtaccat 41624728  T
Q  147 atccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcatg 239  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||  |||||||||||    
T  41624729 atccaaattatggtccatccagttcaactcaacctaagttcatggagtttatcccaactgccggctttccaaagaagtgatacttgatgcatg 41624821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 7590033 - 7589837
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| ||||||||| ||| || ||||||||||||||| ||| ||||||||| ||||||||||||||||| || |||||||| |||||| |||| || |    
T  7590033 ggtatgacattagaggaccaattgtttcaaatgagaggcataaacaaacaccaatgaggggtcctgcaccagcatatccaactactcctggcgttattag 7589934  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatg 235  Q
    ||| |||||||||| |||||||  || |||||| | ||||||||| |||||| ||||||||||||||| ||  ||| ||||||||||| ||||||||    
T  7589933 agtaccatatccaagttatggtttattcggttcgactcaacctaaattcatgaagtttatcccaacccccgaattttcaaagaagtgatgcttgatg 7589837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 22219825 - 22219645
Alignment:
Q  56 ccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaatt 155  Q
    ||||||||||||||||||| | ||| |||||||||||||| || |||||| ||| ||||||||||||||  ||  ||| || || || |||||  || ||    
T  22219825 ccagttatttcaaatgagaagtctacgcaaacaccagtgaaggttcctgctccaccacatccaactgcttatggagttattagaatgtcatattaaagtt 22219726  T
Q  156 atggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgc 236  Q
    ||||  |||||||||| | ||||||  | ||||||||||||||| ||||||  || ||| ||||||||||| | |||||||    
T  22219725 atgggtcatccggttctactcaaccctaattcatggagtttatctcaaccccgggattttcaaagaagtgatgtttgatgc 22219645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 31886694 - 31886508
Alignment:
Q  48 ttagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccata 147  Q
    ||||||||||  || |||||  ||| |||||||||||||||||| |||| |||||||||||| | ||||||||| || ||| | |  || | || |||||    
T  31886694 ttagaggtccgtttctttcagctgataggcctaagcaaacaccaatgagaggtcctgcaccagctcatccaacttctgctggcataattagggttccata 31886595  T
Q  148 tccaaattatggtccatccggttcaagtcaac---ctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
    |||||  ||||||||| ||||||| | |||||   |||| |||||||||||||| |||||   ||| ||||||||||||||| ||||    
T  31886594 tccaacctatggtccacccggttcgactcaacctactaaattcatggagtttataccaacttccggatttccaaagaagtgatgctt 31886508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 1846433 - 1846587
Alignment:
Q  74 aggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaa 173  Q
    |||||||| ||||||||| ||||||||||||||| | | ||||||||| |||||| | |  || ||||  |||||||||  |||||| || |||||||||    
T  1846433 aggcctaaacaaacaccaatgaggggtcctgcacaagctcatccaactcctcctggcataattagagtttcatatccaacctatggttcacccggttcaa 1846532  T
Q  174 gtcaacctaagttcatggagtttatcccaa-ccctcggctttccaaagaagtgaa 227  Q
     ||||||| | |||||||||||||| |||| ||| ||  |||||||| |||||||    
T  1846533 atcaacctcaattcatggagtttataccaatcccccgaatttccaaaaaagtgaa 1846587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 51685016 - 51685177
Alignment:
Q  42 atggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagt 141  Q
    ||||||| ||||  ||||| ||||| ||||| | || ||| ||||||||| | ||||||||||| |||  |||||||||||||||||  ||| || ||||    
T  51685016 atggcatgagagaaccagtgatttcgaatgacaagcataaacaaacaccactaaggggtcctgctccacaacatccaactgctcctggagttattagagt 51685115  T
Q  142 gccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaa 203  Q
     ||| |||||||||| || ||||||| ||| | ||||||  | | |||||||||||||||||    
T  51685116 tccaaatccaaattacgggccatccgcttctactcaaccccaatacatggagtttatcccaa 51685177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 17515725 - 17515888
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||||||  ||| || |||    
T  17515725 tatggcatgagaggaccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctggagttattagag 17515824  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    |  || |||||||||  ||  |||||| ||| | ||||||  | | ||||||||||||||||||    
T  17515825 tttcaaatccaaattccgggtcatccgcttctactcaaccccaatacatggagtttatcccaac 17515888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 17260316 - 17260406
Alignment:
Q  145 atatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatg 235  Q
    |||||||| |||||||||||| ||||| | ||||||||| |||||||||||||||||||||  ||| ||| |||| ||||||  |||||||    
T  17260316 atatccaacttatggtccatctggttcgactcaacctaaattcatggagtttatcccaacctccggattttcaaataagtgattcttgatg 17260406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 35905452 - 35905340
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||||| ||||||||||| | || ||| ||||||||| | |||||||||||||||  | |||||||||||||||  ||| || |||    
T  35905452 tatggcatgagaggaccagtgatttcaaatgacatgcataaacaaacaccactcaggggtcctgcaccacaaaatccaactgctcctggagttattagag 35905353  T
Q  141 tgccatatccaaa 153  Q
    | ||| |||||||    
T  35905352 ttccaaatccaaa 35905340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 48830544 - 48830383
Alignment:
Q  42 atggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagt 141  Q
    ||||||| ||||  ||||| ||||||||||| |||| ||| ||||||||| ||||||||||||| |||  | ||||||||||| |||  ||| || ||||    
T  48830544 atggcatgagagaaccagtgatttcaaatgacaggcataaacaaacaccattgaggggtcctgctccacaaaatccaactgcttctggagttattagagt 48830445  T
Q  142 gccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaa 203  Q
     ||| || ||||||  ||  |||||| ||| | ||||||  | | |||||||||||||||||    
T  48830444 tccaaattcaaattgcggatcatccgcttctactcaaccccaatacatggagtttatcccaa 48830383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 610030 - 610130
Alignment:
Q  56 ccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaatt 155  Q
    ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||||||  ||| || |||| ||| |||||||||    
T  610030 ccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctggagttattagagttccaaatccaaatt 610129  T
Q  156 a 156  Q
    |    
T  610130 a 610130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 21349109 - 21349272
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||||| ||||||||||| | || ||| |||| || ||||||||| ||||| |||  | |||||| ||||||||  |||  | |||    
T  21349109 tatggcatgagaggaccagtgatttcaaatgacatgcataaacaaatactagtgaggggccctgctccacaaaatccaattgctcctggagttagtagag 21349208  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| || ||||||  ||| | ||||||  | | ||||||||||||||||||    
T  21349209 ttccaaatccaaattacgggccatccacttctactcaaccccaatacatggagtttatcccaac 21349272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 54898845 - 54898928
Alignment:
Q  45 gcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctg 128  Q
    |||| ||||| ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||||||    
T  54898845 gcatgagaggaccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctg 54898928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 42279932 - 42280025
Alignment:
Q  62 atttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaatt 155  Q
    ||||||||||| |||| ||| |||||||||  |||||||||||| |||  | |||||||||||||||  ||| || |||| ||| |||||||||    
T  42279932 atttcaaatgacaggcataaacaaacaccaccgaggggtcctgctccacaaaatccaactgctcctggagttattagagttccaaatccaaatt 42280025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 45256641 - 45256486
Alignment:
Q  74 aggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaa 173  Q
    ||||||||||| |||||| |||||||| |||||||| |  ||||||||  | ||| | |  || | || ||||||||||  ||||||||| ||||||| |    
T  45256641 aggcctaagcagacaccaatgaggggttctgcaccagcttatccaactcatgctggcatgattagggttccatatccaacctatggtccacccggttcga 45256542  T
Q  174 gtcaaccta---agttcatggagtttatcccaaccctcggctttccaaagaagtga 226  Q
     ||||||||   | |||||||||||||| ||||| | ||  |||||||||||||||    
T  45256541 ctcaacctactaaattcatggagtttataccaactcccgaatttccaaagaagtga 45256486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 2225877 - 2225781
Alignment:
Q  57 cagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaa 153  Q
    |||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||||||  ||| || |||| ||| |||||||    
T  2225877 cagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctggagttattagagttccaaatccaaa 2225781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 7884613 - 7884501
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| | ||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | || ||||||||||||  ||| || |||    
T  7884613 tatggcatgagaggacaagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaattcaactgctcctggagttattagag 7884514  T
Q  141 tgccatatccaaa 153  Q
    | ||| |||||||    
T  7884513 ttccaaatccaaa 7884501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 41978152 - 41978264
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||| | ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | || ||||||||||||  ||| || |||    
T  41978152 tatggcatgagaagaccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaattcaactgctcctggagttattagag 41978251  T
Q  141 tgccatatccaaa 153  Q
    | ||| |||||||    
T  41978252 ttccaaatccaaa 41978264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 46198135 - 46198298
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| |||||  |||| ||||||||||| | || ||| ||||||||| ||||||||| | | |||  | || ||||||||||||  ||| || |||    
T  46198135 tatggcatgagaggatcagtgatttcaaatgacatgcataaacaaacaccactgaggggtcatactccacaaaattcaactgctcctggagttattagag 46198234  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| ||  |||||  ||| | ||||||  | | ||||||||||||||||||    
T  46198235 ttccaaatccaaattacgggtcatccacttctactcaaccccaatacatggagtttatcccaac 46198298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 17260237 - 17260294
Alignment:
Q  60 ttatttcaaatgagaggcctaagcaaa-caccagtgaggggtcctgcaccatcacatc 116  Q
    |||||||||||| || | ||||||||| |||||||||| |||||||||||| ||||||    
T  17260237 ttatttcaaatgggaagtctaagcaaaacaccagtgagtggtcctgcaccagcacatc 17260294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 44794622 - 44794783
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||| | | ||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||| ||  ||| || ||     
T  44794622 tatggcatgagaggaccaatgaattcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaagatccaactgctcttggagttattagaa 44794721  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatccca 202  Q
    |  || |||||||||| ||  |||||| ||| | ||||||  | | ||||||||||||||||    
T  44794722 tttcaaatccaaattacgggtcatccgcttctactcaaccccaatacatggagtttatccca 44794783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 2660628 - 2660712
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctc 125  Q
    |||||||| ||||| ||| | ||||||||||| | || ||| ||||||||| | ||||||||||| |||  | ||||||||||||    
T  2660628 tatggcatgagaggaccaatgatttcaaatgacatgcataaacaaacaccacttaggggtcctgctccacaagatccaactgctc 2660712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 204
Target Start/End: Complemental strand, 44275930 - 44275782
Alignment:
Q  56 ccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaatt 155  Q
    ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | || ||||||||| ||  ||| || |||| ||| || ||||||    
T  44275930 ccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaattcaactgctcatggagttattagagttccaaattcaaatt 44275831  T
Q  156 atggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||  |||||| ||| | | ||||  | | ||||||||||||||||||    
T  44275830 acgggtcatccgcttctacttaaccccaatacatggagtttatcccaac 44275782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 11164634 - 11164822
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||                  |||| |||||||    
T  11164634 ggtatggcattagaggtccaattatttcaaatgagagacctaagcaaataccagtgaggggtcctgcacc------------------tgacattgttcg 11164715  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcat 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  11164716 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaacccccgactttccaaagaagtgaagcttgatgcat 11164815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 25171052 - 25170855
Alignment:
Q  47 attagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccat 146  Q
    |||||||| ||| || |||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||||||  |||| || |||| ||||    
T  25171052 attagagggccaattgtttcaaatgagaggcctaagcaaacaccagtgaggg-tcatgcactagcacatccaactgctcctagcgttattagagttccat 25170954  T
Q  147 atccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcatgcttaga 245  Q
    ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||  |||| ||||||||||  ||||||||||| |||||    
T  25170953 atcgaaattatggtccatccggttcaactcaacctaagttcattgagtttatcccaacccacgaatttctaaagaagtgatacttgatgcatgtttaga 25170855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 31209652 - 31209846
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||| ||||||||| ||| |||||| |||||||||||||||| |||||||||||||||||| ||||| | |||||||||||||||||| |||| || |||    
T  31209652 tatgacattagaggaccaattattttaaatgagaggcctaagaaaacaccagtgaggggtcatgcacaaacacatccaactgctcctggcgttattagag 31209751  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatg 235  Q
    | |||||||||| |||||||| || |||||| | ||||| ||| ||| ||||||||||||||||||     ||||||||||||||| ||||||||    
T  31209752 taccatatccaagttatggtctattcggttcgactcaacataaattcgtggagtttatcccaacccctaaatttccaaagaagtgatgcttgatg 31209846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 30640633 - 30640441
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||| ||||| | |||||| |||||  ||| |||||||||||||||| | |||||||||||||||||   ||||||||| |||||| | |  || |    
T  30640633 ggtatggccttagaagaccagttttttcagctgataggcctaagcaaacacaaatgaggggtcctgcaccaggtcatccaactcctcctggcataattag 30640534  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
    |||  |||||||||  ||||||||||||||||| | ||||||| | |||||||||||||| ||||||| ||| ||||||| ||||||||||||    
T  30640533 agtttcatatccaacctatggtccatccggttcgaatcaacctcaattcatggagtttataccaacccccggatttccaatgaagtgaagctt 30640441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 231
Target Start/End: Original strand, 4645377 - 4645572
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||| ||||||| || |||  ||||  ||| ||||||||| | |||||| ||||||||||||||||| | ||||||||| || ||| | |  || |    
T  4645377 ggtatggccttagaggaccggttccttcagctgaaaggcctaagaatacaccaatgaggggtcctgcaccagctcatccaactcctgctggcatgattag 4645476  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacc---taagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     || ||||||||||  ||||||||| ||||||| | ||||||   ||| |||||||||||||| ||||| | ||| ||||||||||||||| ||||    
T  4645477 ggttccatatccaacctatggtccacccggttcgactcaacctattaaattcatggagtttataccaactcccggatttccaaagaagtgatgctt 4645572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 7372689 - 7372526
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| | ||| ||||||||||  | || ||| ||||||||| ||||||||||||| |||  | |||||||||||||||  ||| || |||    
T  7372689 tatggcatgagaggactagtgatttcaaatggcatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctggagttattagag 7372590  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| ||  |||||| ||| | ||||||  | | ||||||||||||||||||    
T  7372589 ttccaaatccaaattacgggtcatccgcttctactcaaccccaatacatggagtttatcccaac 7372526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 231
Target Start/End: Original strand, 29113944 - 29114136
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||| ||||||| ||||||  ||||  | | ||||| ||| | ||||||  |||||||||||||||| | ||||||||| || ||| | |  || |    
T  29113944 ggtatggccttagaggaccagttccttcagctaataggccaaagaatacaccaacgaggggtcctgcaccagctcatccaactcctgctggcatgattag 29114043  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     || ||||||||||  ||||||||| ||||||| | ||||||| | |||||||||||||| ||||| | ||| ||| | ||||||||| ||||    
T  29114044 ggttccatatccaacctatggtccacccggttcgactcaacctcaattcatggagtttataccaactcccggattttccaagaagtgatgctt 29114136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 20523781 - 20523944
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcc-tgacgttgttcga 139  Q
    |||||||| ||||| ||||| ||||||||||  | || ||| ||||||||| ||||| ||||||| |||  | ||||||||||||| ||| ||| || ||    
T  20523781 tatggcatgagaggaccagtgatttcaaatgtcatgcataaacaaacaccactgaggtgtcctgctccacaaaatccaactgctccatga-gttattaga 20523879  T
Q  140 gtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
     | ||| |||||||||||||  |||||| ||| | ||||||  | | ||||||||||||||||||    
T  20523880 cttccaaatccaaattatgggtcatccgcttctactcaaccccaatacatggagtttatcccaac 20523944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 6899904 - 6900013
Alignment:
Q  56 ccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaatt 155  Q
    ||||| ||||||||||| |||| ||| ||||||||| ||||||||||||| |||  | |||||||||||  ||  ||| || |||| ||| |||||||||    
T  6899904 ccagtgatttcaaatgacaggcataaacaaacaccactgaggggtcctgctccacaaaatccaactgcttttggagttattagagttccaaatccaaatt 6900003  T
Q  156 atggtccatc 165  Q
     ||| |||||    
T  6900004 gtgggccatc 6900013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 7050163 - 7050248
Alignment:
Q  42 atggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcct 127  Q
    ||||||| ||||  ||||| |||| |||||| |||| ||| ||||||||| ||||||||||||| |||  | ||||||||| ||||    
T  7050163 atggcatgagagaaccagtgattttaaatgacaggcataaacaaacaccattgaggggtcctgctccacaaaatccaactggtcct 7050248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 9399067 - 9399127
Alignment:
Q  45 gcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgc 105  Q
    |||| ||||| ||||| ||||||||||| || | ||| ||||||||| |||||||||||||    
T  9399067 gcatgagaggaccagtgatttcaaatgacagacataaacaaacaccactgaggggtcctgc 9399127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 245
Target Start/End: Complemental strand, 35395 - 35209
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||                  |||| |||||||||    
T  35395 tatgacattaaaggtccagttatttcaaatgagaggcctaagcaaacaccaatgaggggtcctgcacc------------------tgacattgttcgag 35314  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgcatgc 240  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35313 tgccatatccaaattatggtctatccggttcaagtcaacctaagttcatggagtttatcccaacccccggctttccaaagaagtgaagcttgatgcatgc 35214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 39 - 245
Target Start/End: Complemental strand, 29124 - 28929
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| ||||||||| ||| |||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||           ||     
T  29124 ggtatgacattagagggccaattatttcaaatgagagac-taagcaaacaccagtgaagggtcctgcaccatcacatccaactgct-----------tca 29037  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaa-ccctcggctttccaaagaagtgaagcttgatgca 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||  |||||||||||||||||||||    
T  29036 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaatcccctggctttttaaagaagtgaagcttgatgca 28937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 15458152 - 15457968
Alignment:
Q  46 cattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgcca 145  Q
    ||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| || |||| |||    
T  15458152 cattagaggaccaattatttcaaatgagag-cctaagcaagcaccagtgaggggtcctgcatcagcacatccaactgctcctgacgttattagagtacca 15458054  T
Q  146 tatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
    ||||||| |||| ||||||||||||| | ||||||||| |||||||||||||||||||||  ||| |||||||| |||||| ||||    
T  15458053 tatccaagttatagtccatccggttcgactcaacctaaattcatggagtttatcccaacctccggatttccaaaaaagtgatgctt 15457968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 9221402 - 9221237
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||| ||||| |||  |||||||| |||||   |||||||||||  ||||||||| ||||| ||| ||||||||||||||||||  |||||| |    
T  9221402 ggtatggcatgagaggaccaactatttcaactgagaaatctaagcaaacattagtgagggg-cctgctccaccacatccaactgctcctggagttgttag 9221304  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaacc 205  Q
    | || ||||||||| |||||| |||||| |||| | ||||||  ||||||||||||||||| |||||    
T  9221303 aatgacatatccaagttatgggccatccagttctactcaaccatagttcatggagtttatcacaacc 9221237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 25510285 - 25510124
Alignment:
Q  60 ttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatgg 159  Q
    |||||||||||| |||||||||| ||||||||||||||||||||| | |   |||||    |||||||| |||| || |||| ||||||| || ||||||    
T  25510285 ttatttcaaatgtgaggcctaagaaaacaccagtgaggggtcctgtagctggacatc----tgctcctggcgttattagagtaccatatctaagttatgg 25510190  T
Q  160 tccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtga 226  Q
    | |||||||||| | |||| |||| |||||||||||||| || | || ||| |||||||||||||||    
T  25510189 ttcatccggttcgactcaatctaaattcatggagtttattcc-atccacggatttccaaagaagtga 25510124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 236
Target Start/End: Original strand, 27076190 - 27076387
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||||||| ||||| | ||||||||||| ||||| | ||| |||||||| ||||||||||||||| ||| ||||||||||| |||||   | | ||      
T  27076190 ggtatggcatgagaggactagttatttcaattgagaagtctacgcaaacactagtgaggggtcctgctccaccacatccaactactcctagagctattaa 27076289  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaaccctcggctttccaaagaagtgaagcttgatgc 236  Q
    | || ||||||||| |||| | |||||  |||| | ||| ||  | ||||||||||||||||||||||   | ||| ||||||||||| | |||||||    
T  27076290 aatgtcatatccaagttataggccatctagttctactcatccctaattcatggagtttatcccaaccccaagattttcaaagaagtgatgtttgatgc 27076387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 231
Target Start/End: Original strand, 32088724 - 32088919
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    |||||| | ||||||| |||||| |||||  ||| |||||||||||||||||| ||| ||||||||||||  | ||||||||| || ||  | |  || |    
T  32088724 ggtatgaccttagaggaccagttctttcagttgataggcctaagcaaacaccaatgaagggtcctgcacctgctcatccaactcctgctagcataattag 32088823  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaaccta---agttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     || ||||||||||  ||||||||||||||||| | ||||||||   | |||||||||||||  |||||   ||| ||||||||||||||| ||||    
T  32088824 ggttccatatccaacctatggtccatccggttcgactcaacctactgaattcatggagtttagaccaactaccggatttccaaagaagtgatgctt 32088919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 2854038 - 2853875
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||| | ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||| ||  ||| || |||    
T  2854038 tatggcatgagaggaccaatgatttcaaatgacatgcataaacaaacaccattgaggggtcctgctccacaagatccaactgctcttggagttattagag 2853939  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| ||  |||||| ||| | ||||||  | | ||||||||||||||||||    
T  2853938 ttccaaatccaaattacgggtcatccgcttctactcaaccctaatacatggagtttatcccaac 2853875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 18727863 - 18727669
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcg 138  Q
    ||||| || ||||||| |||||| |||||  ||| | |||||||||||||||| ||| ||||||||||||| | ||||||||| || ||| | |  || |    
T  18727863 ggtatagccttagaggaccagttctttcagttgataagcctaagcaaacaccaatga-gggtcctgcaccagctcatccaactccttctggcataattag 18727765  T
Q  139 agtgccatatccaaattatggtccatccggttcaagtcaaccta---agttcatggagtttatcccaaccctcggctttccaaagaagtgaagctt 231  Q
     || ||||||||||  |||| ||||| |||||| | ||||||||   | |||||||||||||| |||||   ||| ||||||||||||||| ||||    
T  18727764 ggttccatatccaacctatgttccattcggttcgactcaacctactgaattcatggagtttataccaactaccggatttccaaagaagtgatgctt 18727669  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 7268247 - 7268334
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctg 128  Q
    |||||||| ||||| ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||||||    
T  7268247 tatggcatgagaggaccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctg 7268334  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 19997579 - 19997712
Alignment:
Q  102 ctgcaccatcacatccaactgctcctgacgttgttcgagtgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatccc 201  Q
    |||| ||| |||||||||||||| |||| ||| || || |||||||||||| |||||| ||||||  ||| | | ||||  | |||||||||||||| ||    
T  19997579 ctgctccaccacatccaactgcttctgaagttattagaatgccatatccaagttatgggccatcctattctatttaaccctaattcatggagtttattcc 19997678  T
Q  202 aaccctcgg-ctttccaaagaagtgaagcttgat 234  Q
    ||||| |||  ||| ||||||||||| |||||||    
T  19997679 aacccccggaattttcaaagaagtgatgcttgat 19997712  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 17574726 - 17574834
Alignment:
Q  45 gcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgagtgcc 144  Q
    |||| ||||| ||||| ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||||||||||  ||| || |||| ||    
T  17574726 gcatgagaggaccagtgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctggagttattagagttcc 17574825  T
Q  145 atatccaaa 153  Q
    | |||||||    
T  17574826 aaatccaaa 17574834  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 6116122 - 6116204
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaact 121  Q
    ||||||| || ||||  ||| ||||||||| ||||||| ||||||||||| |||||||| ||||||  ||| |||||||||||    
T  6116122 ggtatggtatgagagaaccaattatttcaactgagaggtctaagcaaacaacagtgaggagtcctgatccaacacatccaact 6116204  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 12737524 - 12737686
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| || || ||||||||||| | || |||||||||| || ||| ||||||||| |||  | || |||||||||||   ||| || ||     
T  12737524 tatggcatgagaggacctgtgatttcaaatgacatgcataagcaaacatcactga-gggtcctgctccacaaaattcaactgctcctagagttattagat 12737622  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| || ||||||| ||| | ||||||  | | ||||||||||||||||||    
T  12737623 ttccaaatccaaattacgggccatccgcttctactcaaccgcaatacatggagtttatcccaac 12737686  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 12800347 - 12800509
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| || || ||||||||||| | || |||||||||| || ||| ||||||||| |||  | || |||||||||||   ||| || ||     
T  12800347 tatggcatgagaggacctgtgatttcaaatgacatgcataagcaaacatcactga-gggtcctgctccacaaaattcaactgctcctagagttattagat 12800445  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| || ||||||| ||| | ||||||  | | ||||||||||||||||||    
T  12800446 ttccaaatccaaattacgggccatccgcttctactcaaccgcaatacatggagtttatcccaac 12800509  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 24540920 - 24540757
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctgacgttgttcgag 140  Q
    |||||||| ||||| ||| | ||||||||||| | || ||| ||||||||| ||||||||||||| |||  | |||||||  ||| ||  ||| || ||     
T  24540920 tatggcatgagaggaccaatgatttcaaatgacatgcataaacaaacaccactgaggggtcctgctccacaagatccaacaactcttggagttattagaa 24540821  T
Q  141 tgccatatccaaattatggtccatccggttcaagtcaacctaagttcatggagtttatcccaac 204  Q
    | ||| |||||||||| ||  |||||| ||| | ||||||  | | ||||||||||||||||||    
T  24540820 ttccaaatccaaattacgggtcatccgcttctactcaaccccaatacatggagtttatcccaac 24540757  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 35399518 - 35399588
Alignment:
Q  39 ggtatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcacca 109  Q
    |||||||| ||||||| | |||| || ||  ||| |||||||||||||||||| |||| ||||||||||||    
T  35399518 ggtatggccttagaggactagttcttacatctgataggcctaagcaaacaccaatgagaggtcctgcacca 35399588  T

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Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 108306 - 108219
Alignment:
Q  41 tatggcattagaggtccagttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgcaccatcacatccaactgctcctg 128  Q
    |||||||| ||| | ||||| |||| |||||| |||| ||| ||||||||| ||||||||||||| |||  | |||||||||||||||    
T  108306 tatggcatgagaagaccagtgattttaaatgacaggcataaacaaacaccactgaggggtcctgctccacaaaatccaactgctcctg 108219  T

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