View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_1D_low_25 (Length: 222)
Name: NF9873_1D_low_25
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_low_25 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 14194504 - 14194627
Alignment:
| Q |
79 |
ttaattcgcataaaagaaagaatgtcaatatcatctaaaacagcagcttaggattaatttacaagttacaacaaaaataagttattgatatccttaaatc |
178 |
Q |
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| T |
14194504 |
ttaatttgcataaaagaaagaatgtcaatatcatctaaaacagcagcttaggattaatttacaagttacaacaaaaataagctattgatatccttaaatc |
14194603 |
T |
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| Q |
179 |
cattttggttttcaacatcgtttt |
202 |
Q |
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| T |
14194604 |
cattttggttttcatcgtcgtttt |
14194627 |
T |
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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 14181378 - 14181466
Alignment:
| Q |
114 |
taaaacagcagcttaggattaatttacaagttacaacaaaaataagttattgatatccttaaatccattttggttttcaacatcgtttt |
202 |
Q |
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| T |
14181378 |
taaaacagcagcttatgattaatttacaagttacaataaaaataagctattgatatccttaaatccattttggttttcatcatcatttt |
14181466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 356229 - 356313
Alignment:
| Q |
13 |
atcaagtagtaaaaagagtattgatccacatgaaattttatatgattaccaatctaatttttagttttaattcgcataaaagaaa |
97 |
Q |
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| T |
356229 |
atcaaatagtaaaaagagtattgatctacagggaattttatatgattaccaatctaatttttagttttaattagcggaaaagaaa |
356313 |
T |
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